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- **acted_on_behalf_of**
- **ended_at_time**
- **has_maximum_numeric_value**
- **has_minimum_numeric_value**
- **has_numeric_value**
- **has_raw_value**
- **has_unit**
- **latitude**
- **longi…
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hello!great job! 理论上来说在下游任务的微调阶段,只用到了预训练backbone的encoder部分,只需要序列输入得到representation,那么为什么在EPCOT_usage里面还需要dnase文件作为输入呢。。。
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您好!你们的论文非常棒,我尝试重新训练一次模型,后面我打算用自己的新HIC数据复现一遍。
我从当前github代码库能够通过数据处理的代码到6种细胞系类型的序列数据Seq.npz,但是无法获得这6种细胞系数据对应的DNase数据。
于是我重新阅读文章,从补充文件种得到一个Excel表格,里面的子表1提到配套的DNase数据,但是似乎与您提供的“demo”目录中“DNase”数据不太一样…
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Hi,
Nice package for multi-omics! Many thanks for developing and maintaining it.
I have a multi-omic dataset and wanted to create a simulated dataset based on it.
That dataset have a block of da…
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Hi,
Thanks for this pipeline.
I was trying to use it on atac-seq data. I got the following error message:
`Caused by: Process bamCoverage (1) terminated with an error exit status (127) Comma…
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Hi Dave,
Great work.
We are trying to run Basenji for a plant genome (A.thaliana), the tutorials seem to assume we already have alignments done with bowtie2.
Could you please explain how we…
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Hello,
Thanks for your contribution to develop this tool. Could you give me any hints about how to use FLAMINGO to construct 3D organization in specific region? Like 1-2Mb ? And I urgently need thi…
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I think there are issues with the download button for upset plots? I get this error:
```
--- Running overlap_upset_plot() ---
overlap_upset_plot(): Done in 40.8s.
Quitting from lines 338-351 (Ep…
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I am trying to call peaks in ATAC-seq data. According to the documentation:
> To find enriched cutting sites such as some DNAse-Seq datasets. In this case, all 5' ends of sequenced reads should be ex…
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Hi,
I have been trying to run your pipeline on the mm10 data set (as setup by running install_genome_data.sh ). As there were no fast files, I made a bam file from the bed files and am running the…