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This is a new iteration of the data, making #3567 obsolete:
```
❯ gsutil ls gs://ot_orchestration/releases/24.10_freeze2/
gs://ot_orchestration/releases/24.10_freeze2/locus_to_gene_gold_standard.json…
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Hello,
I'm trying to apply CAFEH to detect multi tissue eQTL across ~15 cell states and I'm encountering several issues at the moment.
1/ First CAFEH seems to multithread without warning the …
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eQTL mapping is now also conducted on SNPs that are multiallelic (i.e. have more than two alleles). These SNPs should be excluded and in SNPQCLog.txt there should be a warning on these SNPs.
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We are trying to use your tool to detect eQTLs in single-cell data, where we have done initial eQTL mapping across different conditions.
In our dataset these conditions are different stimulation cond…
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Hi
I am trying to do a fine-mapping for my eQTL and sQTL data, followed by colocalization with GWAS. I am wondering how to make my grid file. I only have one study so I know that I can set phi to z…
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Hello,
It has been a while now that I am using this powerful tool which is tensorqtl so thanks for the work. Recently, I'have tried to perform a cis-mapping with an interaction term (which is the s…
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Hi, I have a couple of questions about the Normalized bulk transcriptomics according to your paper and GTEx pipeline, as below:
1. Discard under-represented tissues (n = 5), namely bladder,
cervix (…
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Hello, we are using your software for our analysis. However, we found the datasets you used in genetic-map-construction.Rmd were not available now.
Could you please kindly provide us the data? That …
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Dear Mike,
I am wondering How LD clumping was performed to select eQTLs for candidate gene in eQTL-based two-sample Mendelian Randomization? How to handle pleiotropy eQTL issue? for example, a SNP …
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Hi Kai,
thanks for your tool on cross-ancestry fine-mapping!
Currently I'm trying to do cross-ancestry fine-mapping for two ancestries and both GWASs are performed with the same set of covaria…