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Depends on https://github.com/microbiomedata/nmdc_automation/issues/222
logic will need to be added to decide what workflow component to run for nmdc:MetatranscriptomeExpressionAnalysis.
nmdc:Me…
aclum updated
2 weeks ago
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Hello,
I want to make sanity checks for the FoldChange of differential expression analysis. At the moment I'm using the output from AggregateExpression to estimate the expression level, but for abo…
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Hello,
I am having issues running xCell using the Charoentong signatures. This analysis won't run on the webpage and produes the error below. If I select the xCell signatures and use the same data…
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This pipeline uses an expression matrix produced by microarray or RNA-seq analyses. As a starting point, we provide an expression matrix for Arabidopsis
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Hello, trans interaction analysis should use the following model.
python3 -m tensorqtl ${plink_prefix_path} ${expression_bed} ${prefix}
--covariates ${covariates_file}
--interaction ${interactions_…
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I run saw realign after I did register on StereoMap:
saw realign \
--id=Adjuated \
--sn=test \
--count-data=./result/ \
--realigned-image-tar=./test_4.0.1.tar.gz
…
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In the preliminary version of the practical 1, I try to cover following topics:
- [ ] Introduction to Imaging-Based Spatial Transcriptomics (Xenium Platform)
- Overview of Xenium technology and it…
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| --- | --- |
| Bugzilla Link | [509842](https://bugs.eclipse.org/bugs/show_bug.cgi?id=509842) |
| Status | NEW |
| Importance | P3 normal |
| Reported | Jan 03, 2017 04:52 EDT |
| Modified | Aug…