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Hello,
I'm getting this error:
```
fish: Job 1, 'tools/immunopeptidogenomics/squ…' terminated by signal SIGBUS (Misaligned address error)
```
When running squish like so:
```sh
tools/immuno…
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Match [GDC](https://gdc.cancer.gov/about-data/gdc-data-processing/gdc-reference-files)
- include decoys
- include viruses
Will need to
- [x] recreate reference files for all human (h38/hg19) ge…
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Currently, FASTA download can take a long time to process before downloading takes place. This is understandable given the use of blastdbcmd to extract the FASTA data. However, during the processing…
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in case there is a merged input FASTA, use that one for the staging rather than the primary FASTA
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Hello, I am using the software in my non-model species data.
I want to ask how to obtain two files, training_mRNA.fasta and training_lncRNA.fasta, in this step. Is it a file that directly applies ex…
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Hi,
I'm running minigraph-cactus v2.8.1 for a small region of a genome with the following command:
```
singularity exec --contain --bind $(pwd):/data $SCRIPTS cactus-pangenome \
/data/jobstore $fa…
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Hello gifrop team,
I installed gifrop through manual and when I run % gifrop --get_islands
This is gifrop 0.0.9
command issued:
/gss1/App_os7/miniconda3/envs/gifrop/bin/gifrop --get_islands
==…
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Rough sketch of functionality:
* class that takes the `pysam` list of dictionaries `reader.header["SQ"]` and stores something similar to fgbio's [`SequenceMetadata`](https://github.com/fulcrumgenom…
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Hello, thank you very much for this nice tool, I am running a fungal genome for the first time but it seems that there was a problem at the end, "Could not understand FASTA index", how could I solve t…