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* easy_finemap version:0.4.1
* Python version:3.11.5
* Operating System:
### Description
Hi dear Dr.Wang, I come across a problem when I run easyfinemap, as you can see, When I run test data o…
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Hi,
I'm trying to run the workflow locally with wdl using the sample data provided however I run into errors (full error message log attached - [msg_log.txt](https://github.com/FINNGEN/finemapping-…
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Hi Brian,
Sorry for the bad post but see an image of the finemapping plots.
I do not know if there is something going on in the selection of the top SNPs to highlight.
At the beginning I though…
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Hello,
I have result from META analysis done with METAL and my summary stats looks like this:
SNP BP CHR A1 A2 Weight Z P Direction
rs11693919 127673527 2 C T 19586 -5.565 2.617e-08 ---
rs1020…
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Dear @mikegloudemans
Thanks for your great tool!
Could the dispatch.py can be used? which finemap.py 、smr.py and methods/smr/smr.py should be import to dispatch.py?
Thanks in advanced!
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just got this running
Note that
Polyfun susie does not get to run as it is missing the environment
Also note the software is installed
## Code
```
columnsnames = echodata::construct_col…
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Postgap fails when using specific variations in a summary file
Here is an example of a summary file including one of the failing rsID:
variant_id beta p-value
rs2862954 -0.0291 2.…
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I just got this running
Note that:
MAF is not inferred even though I am passing Freq col, and I am seeting maf to calculate
## Code
```
columnsnames = echodata::construct_colmap(munged= FAL…
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I have been trying to run the run_plasma.py script with a test set of allele specific data. However, the following error is thrown:
```bash
./run_plasma.py hap1_1.txt exp1_1.txt hap2_1.txt exp2_1.…
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While exploring the results in the echolocatoR Shiny app, I noticed that FINEMAP never returns more than 1 credible set per locus. This was confusing since SuSiE often returns more than 1 credible set…