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Hello,
I have been using hierfstat to calculate Fis for several populations. But for many populations, the values fis.dosage() gives me lie outside the confidence intervals I get from boot.ppfis().…
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Hi dear people,
I have a few questions regarding the input file from STACKS. My data is from ddRAD, pair-end reads, aligned to a draft genome. I noticed that in the input file made by Stacks there…
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Hi Thierry,
I have DArT data, which I have filtered using the dartR package and now I am using the filtered, final genlight object to try and export it to fineRAD structure input format, but I keep…
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I have a preliminary data set, which was run through the ipyrad pipeline without a reference genome. I used the alleles.loci outputfile with [fineRADstructure-tools](https://github.com/edgardomortiz/f…
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Hi all. I am having trouble converting one of the output files in ipyrad to the finerad format. The alleles file for iPyrad v.0.9 is slightly different then previous version when using a reference gen…
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The line with the `*` and `-` indicating informative or uninformative variable sites needs two more spaces to account for the addition of `_0` and `_1` to the sample names:
```
C_06_0 CAGCTG…
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Trying to filter and convert DArT data using `filter_rad()` produces an error that seems to be related to `ggplot2` themes (though I'm using the recent v3.3.0, see session_info output below).
```
Er…
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Good morning,
I am having a problem installing fineRADstructure in ubuntu 17.10.
Following the instructions in fineRADstructure I get this error after make:
> make
CDPATH="${ZSH_VERSION+.}:" && …
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https://github.com/millanek/fineRADstructure/blob/1720ff1a2d00c1f0697150367bcbe235ebab2e5b/Stacks2fineRAD.py#L56
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I can successfully run radpainter to make a coancestry matrix and then fineradstructure to make an mcmc.xml file, but I cannot seem to get the tree model to work. Here is my command:
finestructure…