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Hi Everyone,
I've been kicking this idea around for a little bit. Our group does a lot of batch processing of input files when we run our pipeline for flow cytometry data. Sometimes the output of a…
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The MC2 Center data model does not currently enable assay-specific metadata to be recorded. Adding these models is a critical part of supporting data sharing and reuse. Potential models to add were or…
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Hi, flow cytometry files from Apogee don't parse with fcs parser.
They (inexplicably) have a bunch of spaces before $P1N in the header, this can be remedied without too much trouble though.
An…
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[CellCNN](https://www.nature.com/articles/ncomms14825) is a powerful new technique to discover rare cell populations that correlate with outcomes variables (eg., Response). It would be powerful to inc…
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It would be cool to open LMD files (generated for example by Gallios machines).
Its possible to do it in R, so one could in principle reimplement in python or just use the R implementation and call it…
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- [ ] Look at the [list](https://docs.google.com/spreadsheets/d/1wNtmceBQwZu71gmQ1Z48yqNdV0zNu9WfZJ5IAhoRnMw/edit#gid=845169585) of data types cohorts are collecting and determine existing nextflow/CW…
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Thanks for providing such an amazing package for analyzing flow cytometry data. However, I encountered a problem when dealing with samples precleaned with flowjo plugin: flowClean. parseWorkspace func…
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Dear Sir/Madam,
I am very interested in applying your flowCore R package in my research. In my current study, I have generated multiple .fcs files with a flow cytometry instrument. Is it possible to …
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Hi there,
Thank you very much for developing this package for analysing flow cytometry data! I've been trying to calculate compensation matrix with spillover() function using single stain controls,…
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Hello,
Sorry for the question that may seem obvious to everyone else. The software reports 2.5% heterozygosity for my sample. Does this mean I have 1 base every 40 that is heterozygous?
It seem…