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**Update**: I created a table to keep track of datasets. It's available [here](https://docs.google.com/spreadsheets/d/1PnATNLBFIilLSYlriOtQuYzXUXB9EEcoaFH0l9wv9ls/edit?usp=sharing).
- [aiSEGCell](h…
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Hi
I am trying to use the th.cyc function.
Could you please have a look at where may be the issue?
```
# Sample data for testing th.cyc directly
cyc
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Hello
We are trying to convert some raw data to use with the SGC algorithm and are getting a crash during the oopsi algorithm.
Any advice is appreciated.
Thanks!
catubc
```
>> CALCIUM_FLUORE…
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I have trained the fluorescence task model with:
`!tape with model=unirep tasks=fluorescence load_from='pretrained_models/unirep_weights.h5' freeze_embedding_weights=True steps_per_epoch=100 datafi…
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8 elements
i0 for before the sample a
and IT (i t transmission) for after the sample
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## 🐛 Bug
When viewing my fluorescence microscopy image in napari the auto contrast leads to significantly oversaturated images and I have to manually update the contrast limits range
Here is a l…
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In the Publication
> Larkin, A.A., Garcia, C.A., Garcia, N. et al. High spatial resolution global ocean metagenomes from Bio-GO-SHIP repeat hydrography transects. Sci Data 8, 107 (2021). https://doi.…
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cwltool version: 3.1.20221018083734
Workflow: [predictions.cwl](https://github.com/simleo/deephealth-pipelines/tree/3037aa6e2e1795268cf52f4170850bab8c3e4b54/cwl). Job file:
```yaml
slide:
cl…
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**Describe the bug**
Issue with dimensions when loading fluorescence data
dimension name = scicon_wlbb2fl_wlbb2fl_data_point
**To Reproduce**
Try load the data:
names = [
'wlbb2fl_FL2s…
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This is not really an issue.
We are using SyMBac for producing training data for fluo imaging/segmentation with Delta. It does seem that Delta is getting confused when all cells in one trench alway…