issues
search
georgeoshardo
/
SyMBac
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
https://doi.org/10.1186/s12915-022-01453-6
GNU General Public License v2.0
18
stars
9
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Intensity Variation for Individual Cells
#49
kmpape
opened
1 month ago
1
Resizing Masks
#48
kmpape
opened
1 month ago
1
Lineage creation error
#47
cmalinmayor
opened
2 months ago
5
Scipy convolve doesn't accept mode="constant"
#46
cmalinmayor
closed
4 months ago
2
Output videos for tracking
#45
cmalinmayor
closed
4 months ago
10
Apple Silicon port
#44
henriquenunez
opened
6 months ago
1
Fix all simulation issues
#43
georgeoshardo
closed
8 months ago
0
Position Shift on Symbac 2
#42
kmpape
closed
4 months ago
5
Cell lengths after division
#41
kmpape
closed
8 months ago
5
include tag mode="constant"
#40
tauzn-clock
closed
1 year ago
0
Error in convolution
#39
tauzn-clock
closed
1 year ago
3
minor update
#38
erezli
closed
4 months ago
1
Labelling
#37
kmpape
closed
4 months ago
5
Dataset from tutorial
#36
kmpape
closed
8 months ago
1
Missing property self.PSF.R in renderer.generate_test_comparison
#35
kmpape
closed
8 months ago
5
generate synthetic images at multiple objectives
#34
bunirules
opened
1 year ago
1
tifffile version
#33
kmpape
closed
1 year ago
1
Unit Test Fails
#32
kmpape
closed
1 year ago
3
SyMBac.phase_contrast_drawing missing in main branch
#31
kmpape
closed
1 year ago
1
Update renderer.py
#30
CharlieW313
closed
1 year ago
0
fix indexing error in pinching
#29
erezli
closed
1 year ago
0
OO
#28
georgeoshardo
closed
1 year ago
1
fix pinching
#27
erezli
closed
1 year ago
0
add cell pinching
#26
erezli
closed
1 year ago
2
Add CodeQL workflow for GitHub code scanning
#25
lgtm-com[bot]
closed
1 year ago
0
Camera noise and 3 d sim
#24
georgeoshardo
closed
1 year ago
0
fix burn_in for in_series output
#23
erezli
closed
2 years ago
3
lysis and option to produce in time series
#22
erezli
closed
2 years ago
2
Smaller Cell length and width Error of ValueError: too many values to unpack (expected 2)
#21
DustinBaek
opened
2 years ago
0
V0.2.0
#20
georgeoshardo
closed
2 years ago
0
Bump tensorflow from 2.6.0 to 2.6.1
#19
dependabot[bot]
closed
2 years ago
1
Replace pymunk simulator back-end with CellModeller
#18
georgeoshardo
closed
1 year ago
0
Add colony simulations using CellModeller
#17
georgeoshardo
closed
1 year ago
0
Package versions have conflicting dependencies
#16
crtorreg
closed
2 years ago
3
GPU agnostic code
#15
georgeoshardo
closed
2 years ago
0
Delete this/add file name arg
#14
georgeoshardo
closed
2 years ago
0
Create LICENSE
#13
georgeoshardo
closed
3 years ago
0
Fourier matching doesn't work for some images
#12
georgeoshardo
opened
3 years ago
1
Fix slight cropping on narrow trenches + curvature
#11
georgeoshardo
opened
3 years ago
0
Use napari for selecting phase contrast colours
#10
georgeoshardo
closed
3 years ago
0
Add drawing code
#9
georgeoshardo
closed
3 years ago
2
SHINE toolbox sfMatch and lumMatch translation
#8
georgeoshardo
closed
3 years ago
1
Add a fluorescence PSF
#7
georgeoshardo
closed
3 years ago
0
Translate PSF generation code from MATLAB to Python.
#6
georgeoshardo
closed
3 years ago
0
Trench spacing fix
#5
georgeoshardo
closed
3 years ago
0
Trench width fix
#4
georgeoshardo
closed
3 years ago
1
Septum formation animation
#3
georgeoshardo
closed
1 year ago
0
Get cell division size variance working
#2
georgeoshardo
closed
3 years ago
1
Add new models
#1
georgeoshardo
opened
3 years ago
1