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I would like to point out that identifiers like “[`_ABSTRACT_FS_H`](https://github.com/sbu-fsl/Metis/blob/aba6e29ed714904bdca3e2ac96d9d13625e7406b/include/abstract_fs.h#L12 "Update candidate")” and “[…
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### Softwares
fMRIPrep output
FSL 6.0.0
### Input data
derivatives (fMRIprep)
### Additional context
This is a running 1st/2nd/3rd level models with different parameters.
### List of tasks
Plea…
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`sct_fmri_compute_tSNR` does not detrend the data before computing the standard deviation. From what I've seen online, it is important to detrend the data before computing the std (the mean should sti…
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A tractogram produced using HCP 100307 had streamlines that were biologically implausible. Initial tests suggest this is from 5TTgen algorithm type.
FSL did not generate an irregular tractogram.
We …
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Hi there,
We are running fsl_topup_epi_eddy on our DWI data (108 directions, b-values from 5 - 3000 mm/s^2) with the following code:
fsl_topup_epi_eddy --imain $dwi_PA,$dwi_AP \
--mask $dwi_PA_…
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This stems from https://github.com/bids-standard/bids-specification/issues/349, which proposed supporting the MRtrix-format tsv file as an optional alternative to FSL-format bval and bvec files. For B…
tsalo updated
1 month ago
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Recording the requests for enhancements to FSL that came up during the review:
From Arup:
_Is there a way to fuse one or more classes of instruction with other instructions? For example, is there …
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### Softwares
FSL v 5.0.9; RRID:SCR_002823 , fmriprep v.1.1.4
### Input data
derivatives (fMRIprep)
### Additional context
This pipeline is (almost) reproduced, only refactoring should be needed.…
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### Softwares
Pipeline using FSL Feat 6.0.0
### Input data
raw data
### Additional context
Preprocessing was conducted using FEAT (FMRI Expert Analysis Tool) v 6.00, part of FSL version 5.0.10 (F…
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### Softwares
FSL 5.0.9
### Input data
derivatives (fMRIprep)
### Additional context
(copied from spreadsheet)
1. Data received in fmriprep pre-processed form; pre-processing steps performed in…