-
Hi, I am analyzing a dataset with several samples that I plan to use for downstream analysis of both gene level and transcript level analyses. I noticed an issue with the gene count matrix generated…
-
Hi,
How to make this pipeline identify the duplicate gene modes of autotetraploid genome? Should I use haplotype-resolved genome or whole genome? Can you answer that for me? Thank you so much!
-
## Overview
We have been discussing this recently. There seems to be some duplication of efforts between the OMIM ingests [used by `mondo-ingest`](https://github.com/monarch-initiative/omim) and [use…
-
I have 3 questions, I am hoping you can help me.
1)In case I want to remove some latent variables such as Sex, but it is not available for all of my samples. The Sex for some samples is NA in the df …
Flu09 updated
1 month ago
-
**Background**
In cases when certain genomes contain lots of genes or gene parts, it might be difficult for users to understand and note some details on the GENE track of such genomes.
It would be u…
-
Related to duplicated gene-disease issue #735.
Recreate: From phenotype http://beta.monarchinitiative.org/phenotype/ZP:0007522, go to Genes tab. Count is 4, but all four are the same gene/associatio…
-
**Is your feature request related to a problem? Please describe.**
For LOVD to store a gene-specific effect of a variant, LOVD must store the mapped gene-level representation of that variant. While i…
-
Ambiguity of gene symbols has multiple prospectives:
a) Ambiguity of human gene symbols between different databases.
b) Ambiguity of human gene symbols within the same database due to symbol duplica…
-
Dear Dr. Qiao,
Of the output files from DupGen_finder, I found that the number of genes in the file 'xxx.wgd.pairs' (after deduplication) is equal to the number in the file 'xxx.wgd.genes'.
But …
-
## Overview
I found one instance where there is an association with multiple mapping keys in `morbidmap.txt`.
```tsv
Phenotype Gene Symbols MIM Number Cyto Location
Neurodevelopmental disorder w…