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Needed for
- Genbank submission. Have to submit the tracking history.
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Hello,
I am trying to run burden testing based on four cohorts for non-coding variants, such as downstream variants using regenie. I have a few questions:
I am getting "Number of ignored tests d…
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### Background
Until recently, a plant genome sequence could be assumed to consist of sequences corresponding to 1n chromosomes, plus some remaining unplaced scaffolds, and maybe also plastid genomes…
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This is not due to ClinVar VCF code but exposed from it.
You can reproduce this via:
```
from snpdb.models import VariantCoordinate, GenomeBuild
vc = VariantCoordinate(chrom='NC_000011.9', position…
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We need to come up with some stats that we want to display for the gene_models files that are consumed.
Its pretty easy to do counts of field 3 and just report these, but should we do more?
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Hey!
Thank you for this great tool!!
Need some help :)
scarlink_tiles -o outdir2 -c group
Traceback (most recent call last):
File "scarlink_tiles", line 33, in
sys.exit(load_entry_p…
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Gene models that have been created through merge and splice events have the history from where they have been originated. The merge and spliced histories have to be imported.
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During the testing of the MGI import to GOC project, I noticed one of our gene-centric models (Cntn2) failed to be exported into MGI from Noctua. Further looking into the model shown: the model was mo…
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## Short description of the problem
anvi-run-kegg-kofams terminated prematurely after producing the hmm.table file
## anvi'o version
Anvi'o .......................................: marie (v8)
…
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kind of like plotting syntenic regions...could be stretch goal