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legumeinfo
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LIS-autocontent
Scrapes the LIS datastore and populates various configs and databases for deployment
Apache License 2.0
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change the initial locus specification from 1-{stop} to 1-1000000 per…
#33
adf-ncgr
closed
4 months ago
0
restrict initial views in jbrowse2 to 1..1,000,000
#32
adf-ncgr
opened
4 months ago
0
Stats for gene_models_main Files
#31
ctcncgr
opened
9 months ago
1
populate-jbrowse2: add refNameAliases when available
#30
nathanweeks
opened
9 months ago
2
Develop
#29
ctcncgr
closed
10 months ago
0
Add Dotplot View Session Objects to Jekyll Site YML
#28
ctcncgr
opened
10 months ago
4
wga bam files in Jbrowse config
#27
adf-ncgr
closed
10 months ago
6
autodetect csi indexes
#26
adf-ncgr
opened
11 months ago
0
adding autocontent-generated resources (ie JBrowse2 links) into the datastore files
#25
adf-ncgr
opened
12 months ago
0
populate-blast should also handle adding libraries for annotation fastas (protein, CDS, mRNA)
#24
adf-ncgr
opened
12 months ago
1
Fix issues with remote call for collections
#23
ctcncgr
opened
1 year ago
0
fixes #21
#22
adf-ncgr
closed
1 year ago
0
problems with synteny track generation
#21
adf-ncgr
closed
1 year ago
0
display names for annotation tracks can be ambiguous when multiple versions exist
#20
adf-ncgr
closed
10 months ago
1
add markers tracks
#19
adf-ncgr
opened
1 year ago
0
Add yaml loader for "about track" in JBrowse2
#18
ctcncgr
opened
1 year ago
0
Annex directory for autocontent
#17
ctcncgr
opened
1 year ago
0
Add jexl links for linkout service to tracks
#16
ctcncgr
opened
1 year ago
0
use the collection id (less the key) as the assembly name instead of …
#15
adf-ncgr
closed
1 year ago
1
use of assembly aliases in auto-generated jbrowse2 configs is problematic for some purposes
#14
adf-ncgr
closed
1 year ago
1
Generate links for JBrowse2 instances from genus.legumeinfo.org automatically
#13
ctcncgr
opened
1 year ago
0
Merge pull request #10 from legumeinfo/develop
#12
ctcncgr
closed
1 year ago
0
Develop
#10
ctcncgr
closed
1 year ago
3
lis-autocontent: Read timed out error
#11
weihuang12
closed
1 year ago
6
Feature/examples
#9
ctcncgr
closed
1 year ago
0
Develop
#8
ctcncgr
closed
1 year ago
3
updated cli, updated code structure, blackened code.
#7
ctcncgr
closed
1 year ago
2
BUSCO modifications
#6
adf-ncgr
closed
1 year ago
2
Feature/sfccinternship polish
#5
ctcncgr
closed
1 year ago
0
Feature/sfccinternship polish
#4
ctcncgr
closed
1 year ago
0
add synteny detection
#3
adf-ncgr
closed
1 year ago
3
add diversity detection
#2
adf-ncgr
opened
1 year ago
0
add standardized JBrowse2 links to yaml for jekyll consumption
#1
adf-ncgr
closed
1 year ago
1