-
Here we consider the types of higher-order **clinical significance** annotations that link 'variants' to 'conditions' to which they might contribute or impact clinical management of, and which we migh…
-
Hey, it's not an issue, but rather a prospective question, hope someone would be able to answer it.
I'm planning to run several thousand individual GWASs on a set of brain imaging measures within th…
-
These three annotation types are related as they build on each other to make statements of higher-order reach and complexity. Here, more fundamental annotations are/can be used as input or evidence i…
-
Hi,
I am running LDSR correlation between two traits (t1d and w6), and when I run the analysis considering an intercept I get the following error:FloatingPointError: invalid value encountered in s…
-
As part of the Variant Page effort, we have discussed to start developing the first two widgets (sample data has been shared on slack):
- [x] ClinVar
```
{
"alleleOrigins": [
"germli…
-
Dear Prof. Wang,
I notice some annotation use "chr1" while others use '1' to represent chromosome. Is there any rule to determine how to select the style?
Here is example for "chr1"
```
==> …
-
ADO has added several object properties which are problematic.
OWLObjectProperty_00000000000000000000 isTreatmentFor is used as relation between the general class 'treatment' and 'Alzheimer's disease…
-
How would it be possible to have a summary made out of a chunk? With a prompt named: `summary_gen.yaml`
**_EDIT: While I had trouble getting my head around the code in `./original`, I started from …
-
Dear Prof. Wang,
I meet an trouble to prepare `gwasCatalog` similar format files. I downloaded gwasCatalog from gwasCatalog website, rather than UCSC and then reformat it as "chr\tstart\tend\anno"…
-
@rbalshaw @farnushfarhadi
the last commit: 7ce221a00db3b079f614041d2bf61afa89c415df
the link to the proposal: https://github.com/STAT540-UBC/team_Methylation-Badassays/blob/master/project_proposal.…