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Opening this issue on behalf of Anush @anushchp:
#### Problem description
> It complains that O2 consuming reactions don’t have fixed bounds. Thermodynamics (using pyTFA: https://github.com/EPFL-…
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Carsten Zengler confirmed consumption of metabolites in S. elongatus. We can use this to confirm nonzero uptake flux (but not growth).
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Hi Neil,
I am trying to convert the yeast genome-scale metabolic model to SBOL with the galaxy tool, but something went wrong there.
Is there any way to fix that?
> Traceback (most recent cal…
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Hello FluxML dev team,
I read the specifications for FluxML and I have a very naive question: why didn't you choose to make an [SBML package](http://sbml.org/Documents/Specifications#SBML_Level_3_P…
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#### A reconstruction is a the broad database of reactions, and becomes a model when it is initialised with constraints.
> The difference between a reconstruction and condition-specific models deri…
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such as https://www.wikipathways.org/index.php/Pathway:WP1438
How can we annotate the species?
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> for bug reports and errors please report the output of: ./gapseq test
Hi
I am now test-running a gapseq with the following command
conda activate Gapseq ;
Tool="/home/sandia/softwares/…
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As mentioned in [3436,](https://github.com/opentargets/issues/issues/3436) the credible set page will also contain:
3. Co-loc with GWAS SNPs - scoping in progress
4. Co-loc with QTLs - scoping in …
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This issue was opened to collect all enhancements for the `polish` module.
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- [ ] Change Regex for biomass to first result of `biomass.test_biomass_presence`
- [ ] #36
- [ ] Add EC numbers -> F…