issues
search
draeger-lab
/
refinegems
refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).
https://refinegems.readthedocs.io/en/latest/
MIT License
10
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Track infeasible error
#125
niinina
opened
1 month ago
0
Add new media to the media database
#123
cb-Hades
opened
1 month ago
0
Issues to resolve before release 2.0
#121
GwennyGit
opened
2 months ago
0
Fix and Extend Documentation for Release 2.0
#120
cb-Hades
opened
2 months ago
0
Move changes from structure update to dev-2
#119
GwennyGit
closed
2 months ago
0
Evaluate & add entry points
#118
GwennyGit
opened
3 months ago
0
Include OmniPath database
#117
famosab
opened
3 months ago
0
Make Tool OS independent
#116
cb-Hades
opened
3 months ago
1
Enhance implementation of EGC algorithm
#114
cb-Hades
opened
4 months ago
0
Enhance biomass standardisation
#112
GwennyGit
opened
5 months ago
0
Hot Fix to enable download
#111
cb-Hades
closed
6 months ago
0
Check SBOannotator usage
#109
cb-Hades
opened
7 months ago
0
fix sqlalchemy.txt for possible different versions
#106
f3rryman
closed
8 months ago
0
fix sqlalchemy.txt
#105
f3rryman
closed
8 months ago
0
Update the `growth` module
#104
GwennyGit
closed
5 months ago
4
progress bar in analysis_db.py
#103
f3rryman
closed
8 months ago
0
Adds publication badge, how to cites and minor changes
#102
GwennyGit
closed
8 months ago
1
changes in analysis_biocyc.py, analysis_db.py, gapfill.py
#101
f3rryman
closed
8 months ago
2
Please add the DOI of the new publication to the README
#100
draeger
closed
8 months ago
2
Integration of utility from SPECIMEN into refinegems
#99
cb-Hades
closed
1 month ago
3
Dev test dependencies
#98
f3rryman
closed
9 months ago
0
Integrate new features database access & more general functions to main
#97
GwennyGit
closed
10 months ago
0
Merge hot fix for polish into main
#96
GwennyGit
closed
10 months ago
0
Hot fix for polish
#95
GwennyGit
closed
10 months ago
2
Merge changes on dev branch for polish module to main for a new release
#93
GwennyGit
closed
11 months ago
0
Feature/polish with bioregistry
#92
GwennyGit
closed
11 months ago
0
Connect the `polish` module to the bioregistry API
#91
GwennyGit
closed
11 months ago
1
Merge bug fix for polish in main
#90
GwennyGit
closed
1 year ago
0
InChI string annotation format broken after refineGEMs.polish
#89
GwennyGit
closed
1 year ago
1
Polish update - Enable more GeneProduct annotations
#88
GwennyGit
closed
7 months ago
0
Add new biomass module to dev
#86
GwennyGit
closed
1 year ago
0
Enhance availability of refineGEMs
#85
GwennyGit
opened
1 year ago
4
Update README.md
#84
famosab
closed
1 year ago
0
New developments into main for first release
#83
famosab
closed
1 year ago
1
Docs update
#82
famosab
closed
1 year ago
0
Add function to check biomass reaction consistency
#81
GwennyGit
closed
1 year ago
2
Media db update
#80
GwennyGit
closed
1 year ago
0
Enhance growth simulation
#79
GwennyGit
opened
1 year ago
0
Updated gapfill for BioCyc #52
#78
GwennyGit
closed
1 year ago
0
Deploy hot fix for gapfill
#77
GwennyGit
closed
1 year ago
0
Hot fix for gapfill
#76
GwennyGit
closed
1 year ago
1
Merge all recent updates on dev in main
#75
GwennyGit
closed
1 year ago
1
Harmonize and improve docstrings and documentation
#74
famosab
closed
1 year ago
2
Gapfill update
#73
GwennyGit
closed
1 year ago
4
Merge new main.py and updated config handling into dev
#72
famosab
closed
1 year ago
0
All new developments into main
#71
famosab
closed
1 year ago
1
Integrate config-update into dev
#70
famosab
closed
1 year ago
0
Make user enter their own config file #57 #55 #46
#69
famosab
closed
1 year ago
0
Merge vis into dev
#68
famosab
closed
1 year ago
0
Databases
#67
GwennyGit
closed
1 year ago
0
Next