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Hi,
Do you think it's possible to use the existing `topr` functions to create a colocalization plot? Specifically, multiple locuszoom plots are superimposed on each other with a shared gene track at…
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If you go to http://tengfei.github.com/ggbio , this is what you see:
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Please export any classes meant to be user-facing (like GGbio, Tracks?) from the NAMESPACE. We need this for ReportingTools (@gmbecker). Thanks!
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Hi, developers,
I just try to rotate chromosome name in circle layout by tuning 'angle' inside or outside `aes`, and meet error once 'angle' is defined inside `aes`. I guess the problem may be from…
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Many ggbio commands give me the above which I understand is due to the latest version of GenomicRanges, for example:
> txdb wh p1 Aggregating TranscriptDb...
> Parsing exons...
> Error in .local(o…
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Hello, I have been trying to follow the example for aligning genomic features with a phylogenetic tree found here:
https://guangchuangyu.github.io/2016/11/align-genomic-features-with-phylogenetic-tre…
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Hello, all, I try to use ggbio to create a lncRNA database(http://www.lncipedia.org/downloads/lncipedia_3_0.gtf), but I got a warning like that ""gap" is not matching to following arbitrary model term…
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Hello
I have a Granges object that is like this :
```
GRanges with 6 ranges and 6 metadata columns:
seqnames ranges strand | score id highlight
| …
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Hi,
I'm trying to use stat_coverage function with a GRanges object with multiple seqnames. When I plot the data, the facets are not created and just the first sequence is plotted. Following your exam…
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The number of dependencies is extremely high, which exposes us to higher risks of package break down, and will be heavily criticized by Bioconductor reviewers.
For each package, we should ponder wh…
plger updated
11 months ago