-
```
gsea_BP_astro_33 0.05 before using gseGO() or keep all genes.
I would appreciate it if you can help. Thanks.
-
**Project description**
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically
significant, concordant differences…
idlip updated
3 months ago
-
I run imt_gsea in linux command line:
~$ imt_gsea -i ~/cyf/IMAGEGENE/Imt_cth_z_reflect_pls/pls_analysis.pkl -g Allen_Brain_Atlas_up -o ~/cyf/IMAGEGENE/AHBA
2024-06-06 18:07:16,803: Performing GSE…
-
Hi,
I am working with compareCluster, trying to do a GSEA analysis using homemade annotation. To do so I decide to use Universal enrichment analysis.
I have a TERM2GENE and TERM2NAME. I am tryin…
-
hello, thank you for making this great tool. I cannot seem to understand how to use it.
I have differentially expressed genes from findmarkers() in seurat between diseased fibroblasts and control fi…
-
Hello,
When I run the R script bulkRNASeq_survival_analysis.R, there is a question. which package is used for the function of gsea?
"gsea(signature = x, geneset =g, twoTails = F, pout = TRUE, per = …
-
Hi,
Now, enriched terms are either up- or down regulated, likely because of the weighting in the running sum implementation. However, there must be terms with mixed enrichment, where some type of m…
-
### Setup
I am reporting a problem with GSEApy version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_implem…
nroak updated
1 month ago
-
-Test coverage
-Needs to be profiled
-Support arbitrary contrasts
-Needs friendlier interface
-Look for a way to avoid the bootstrap
-Return average correlation in test set
-
I created three sets of data for gesa analysis, the first two groups can run normally, but the third group has an error.
Could you please help me to find out what's the problem(s)?
It would be great…