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chuiqin
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irGSEA
The integration of single cell rank-based gene set enrichment analysis
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Error in irGSEA.integrate(object = pbmc3k.final, group.by = "seurat_annotations", : Please imput correct `method`.
#51
RGT183
opened
1 week ago
4
split the data by group or do irGSEA analysis directly on the whole
#50
xjtuZhangKun
opened
2 months ago
0
Error of the statistical methods when using the irGSEA.halfvlnplot function
#49
yecotoo
opened
2 months ago
0
How to solve "Calculate viper scores Error: Windows不支持'mc.cores' > 1 "
#48
XjtuZhangKun-lab
opened
2 months ago
0
seurat findmarkers()
#47
Flu09
opened
2 months ago
4
Error in UseMethod("distinct") in irGSEA.integrate
#46
Cosmic1Neko
closed
3 months ago
0
Seurat 5.0.1，Error: $ operator is invalid for atomic vectors
#45
Pigeongeon
closed
4 months ago
13
The asterisk and less than sign overlap at the p-value of the legend in the heatmap plot
#44
antecede
opened
6 months ago
2
GSVA error with ssGSEA
#43
FaehlingT
opened
6 months ago
2
Step of integrate differential gene set
#42
yanjinxing1
opened
7 months ago
0
one question about "splitByBlocks=T" during irGSEA.score
#41
Taxols1996
opened
7 months ago
0
An error happens when irGSEA.density.scatterplot
#40
CatCatLiang
opened
7 months ago
5
Possibility of Comparison between samples
#39
CatCatLiang
opened
7 months ago
1
Question on Heatmap
#38
randystyle21
opened
8 months ago
1
Top parament in plotting functions
#37
Yumo-Xie
closed
8 months ago
2
a strang bug of irGSEA.score when using AddModuleScore
#36
auromon
opened
8 months ago
1
ERROR happened in irGSEA.integrate
#35
xgwb
opened
8 months ago
10
irGSEA.integrate error and failed to debug
#34
randystyle21
opened
8 months ago
3
irGSEA.integrate
#33
BoatCC123
opened
8 months ago
3
No assay information could be found for ScoreJackStraw
#32
amingjie228
opened
10 months ago
1
When I running irGSEA.integrate encounter a problem
#31
Always-Stude
opened
10 months ago
2
How to specify the certain groups to compare?
#30
JiahuaQu
opened
10 months ago
0
Install error
#29
yang050036
closed
11 months ago
0
irGSEA.integrate error
#28
Lucyyang1991
opened
11 months ago
1
Calculate AUCell scores Error: unused argument (splitByBlocks = TRUE)
#27
skye-12138
closed
11 months ago
4
how to use seurat v5+ bpcells with irGSEA
#26
Lucyyang1991
closed
11 months ago
1
irGSEA on spatial single cell data - CosMX nano string
#25
auroramaurizio
opened
11 months ago
0
运行JASMINE时报错停止
#24
1667857557
closed
4 months ago
2
irGSEA.integrate报错
#23
blanchzl
opened
1 year ago
6
irGSEA.score多个signature运行报错 Error in relist(v, part)
#22
amingson
opened
1 year ago
6
irGSEA.integrate Error：Please imput correct `method`
#21
BioLaoXu
closed
1 year ago
3
Install error
#20
Sunyp-IM
opened
1 year ago
3
group by multiple metadata
#19
wfma
opened
2 years ago
1
Error when calculate irGSEA.score using category = "C5", subcategory = "GO:BP" parameter
#18
itolov
opened
2 years ago
1
Error when plotting irGSEA result
#17
rythi4
opened
2 years ago
0
Error in ridgeplot
#16
lkyhfx
opened
2 years ago
0
how to show different groups in one picture
#15
tu12dou
opened
2 years ago
0
How to fix the error
#14
Kyle1310
opened
2 years ago
3
How to fix it？Error in .local(exprMat, plotStats, nCores, mctype, keepZeroesAsNA, verbose, : unused argument (splitByBlocks = TRUE)
#13
DocMonster77
opened
2 years ago
4
error in irGSEA.score
#12
zy-199326
opened
2 years ago
4
Q:how to show two groups in one scatterplot?
#11
doctorSXY
opened
2 years ago
2
Q:how to show two groups in one scatterplot?
#10
doctorSXY
closed
2 years ago
0
Error in depicting differential genesets while using irGSEA.bubble, irGSEA.bubble,irGSEA.barplot
#9
sukyorsuki
opened
2 years ago
2
irGSEA heatmap plot
#8
zxkeeee
opened
2 years ago
1
problem about “category and method”
#7
YMSWhuang
opened
2 years ago
3
AUCell error
#6
Polligator
closed
2 years ago
4
How to calculate a diy geneset?
#5
htqqdd
closed
2 years ago
1
Errors when running irGSEA.upset
#4
Jonathanyu2014
opened
2 years ago
2
error in irGSEA step
#3
honghh2018
opened
2 years ago
13
what's the mean of direction
#2
haowBio
closed
2 years ago
5
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