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Hello!
I've been racking my brains for two weeks with a problem I hope you'll be able to help me with. Sorry to borrow some of your time and thanks for reading.
I'm simulating an **Au sphere wit…
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Hi,
First of all (once again) thanks for developing this tool!
I'm opening this issue because I've noticed some discrepancies between the results of auxotrophy prediction of `gapseq` and `GapMind` a…
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Hi there,
Thanks a lot for creating these great resources. I am working on a project to build community models. Unfortunately, some of the species are not present in this repository. To be consistent…
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**Abstract**
The Python `ReactionPathDiagram` class could be extended to provide a graph representation of the reaction paths using Python's native data types. This would allow users to perform ope…
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**Description:**
@adamrher , @JulioTBacmeister and @PeterHjortLauritzen would like a new baseline created with cam6_3_100 (FWscHIST, L58) in preparation for evaluating new science code (incl. condens…
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Julia HP optimization packages:
- [ ] [Hyperopt](https://github.com/baggepinnen/Hyperopt.jl).jl @baggepinnen (Random search, Latin hypercube sampling, Bayesian opt)
- [ ] [TreeParzen](https://github…
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**Purpose:**
Testing the 104 configuration with MT. The goal is to do a first coupled MT run
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**Description:**
Similar to 104 but with MT
-**add RRTMGP**
```
./xmlchange --append …
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Daniel was surprised that Zac said that ALT is using both carbon sources at the same time- thought that you could only choose one or the other.
He said to run COMETS with regular FBA (not pFBA) wit…
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**Description:**
Science evaluate "new energy" code (incl. condensates in pressure and having energy fixer use an energy consistent with the dynamical core) and compare to cam6_3_100 baseline (#227)
…
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Hi Peter,
I love using d3flux, but I encountered an issue compared to 0.2.6. In the past, I sometimes had reactions overlap and co-factors on top of each other. In 0.2.7 it seems that every time I …