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mit1002-cue-simulations
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Spatial CUE
#37
hgscott
opened
2 months ago
1
CUE vs Maintenance
#36
hgscott
opened
2 months ago
0
CUE vs O2
#35
hgscott
opened
2 months ago
0
CUE on different carbon sources
#34
hgscott
opened
2 months ago
9
Is a single point steady state CUE the same as cumulative CUE predictions?
#33
hgscott
opened
8 months ago
0
Alt full comets
#32
hgscott
closed
9 months ago
0
Look at epistatic interactions of CUE values
#31
hgscott
opened
9 months ago
0
COMETS simulations for all of Zac's set ups
#30
hgscott
closed
6 months ago
7
Compare pFBA vs FBA results
#29
hgscott
opened
9 months ago
0
See where different C sources go in the network
#28
hgscott
opened
10 months ago
0
Do models use GLC and ACE at the same time
#27
hgscott
opened
10 months ago
32
Update definitions to match Zac
#26
hgscott
closed
6 months ago
7
Actually calculate carbon going to biomass
#25
hgscott
closed
1 year ago
6
C sources
#24
hgscott
closed
1 year ago
0
Get CUE Predictions for a draft ALT Model
#23
hgscott
closed
10 months ago
12
Fix units of the carbon flux
#22
hgscott
opened
1 year ago
0
Rename respiration
#21
hgscott
closed
1 year ago
0
Use pFBA
#20
hgscott
closed
10 months ago
1
Use COBRApy c-flux
#19
hgscott
closed
1 year ago
2
Escher plots for simulations
#18
hgscott
opened
1 year ago
0
Don't call all CO2 release respiration
#17
hgscott
closed
1 year ago
2
Add checks to signs of fluxes
#16
hgscott
opened
1 year ago
0
Error in selecting uptakes and releases based on sign
#15
hgscott
closed
1 year ago
1
Basic FBA: Vary glucose, ammonia, and maintenance
#14
hgscott
closed
1 year ago
0
Clean-up File Strucutre
#13
hgscott
closed
1 year ago
0
Clean up the environment file
#12
hgscott
opened
1 year ago
0
Remove cue-utils
#11
hgscott
closed
7 months ago
3
Spatial CUE
#10
hgscott
closed
10 months ago
1
CUE along a timecourse
#9
hgscott
closed
10 months ago
1
Explanatory diagram of CUE in COMETS
#8
hgscott
closed
10 months ago
1
CUE of E. coli knockouts
#7
hgscott
closed
10 months ago
1
CUE on mixed C-Sources
#6
hgscott
opened
1 year ago
5
CUE vs single C-sources
#5
hgscott
closed
10 months ago
8
How is CUE affected by Biomass function variability?
#4
hgscott
closed
10 months ago
1
Effects of objective function choice
#3
hgscott
closed
10 months ago
1
CUE vs Carbon, Nitrogen, Maintenance
#2
hgscott
closed
1 year ago
7
Explanatory Diagram
#1
hgscott
closed
10 months ago
1