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Hello
I am using BayesSpace method for the clustering of four 10X visum samples using integrated approach (merged samples in one object). Based on the histological images annotation, I found that cl…
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After registering a slice to the atlas, how do you move on to the next slice? It's unclear how to do so, repeating previous steps does not work well as it no longer allows me to register new boundarie…
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- Does this change have buy-in from other groups providing the same kind of data?
This should expand the file types of raw data that can be uploaded. Right now, the specification only allows `.scn`…
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Hello there,
I am a medical student and am using your model to extract features from histological images. These features are then analysed with an FC-layer on top, to learn particular classes. You…
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Hello,
I have a more naive question regarding using CHIEF
I was wondering is CHIEF mainly intended to be used as an encoder, and need to be used with a classification algorithm which takes the extr…
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Hi everyone,
At the moment I’m working on a master thesis, which topic is connected with biomedical image processing. I am writing to you regarding an issue that I am experiencing with the JuliaImage…
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Hi Johannes,
Hope you are well! I have encountered some issues with the inverse transformation unfortunately and was hoping you could please assist. I am currently aiming to analyse irradiation-inj…
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Hello,
Thank you for developing and sharing `CellViT`—it's an impressive tool for cell detection in histology images. I am interested in using it with the [cytoDArk0 dataset](https://zenodo.org/…
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Hello,
I want to express my gratitude for the work you’ve put into developing this package. It’s a fantastic tool and I’m really enjoying using it.
I’ve encountered a couple of issues that I’d l…
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A loose list of things we would need to carry out for a proper release
## Experiment
- [ ] Timelapse Imaging under water (@Vsaggiomo, @beniroquai )
- [ ] Timelapse in Incubator (@ranranking …