TIO-IKIM CellViT issues

TIO-IKIM / CellViT

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

https://doi.org/10.1016/j.media.2024.103143

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Issue with VIT-SAM-H weights during inference on fold1

#75 CYYJL closed 1 day ago
1
Question regarding the batch size

#74 won5830 opened 3 days ago
0
Compatibility of `cytoDArk0` Nissl-stained histological PNG patches with CellViT

#73 shubhankar-git closed 1 day ago
6
IncompatibleKeys warning when replicating PanNuke experiment

#72 schoonhovenrichard closed 1 week ago
2
Data preprocessing error

#71 niuhulu-rui closed 1 day ago
1
Cannot use cucim for patch extraction with ndpi files

#70 OliS1311 closed 2 weeks ago
1
Regarding the issue of inferring the pannuke dataset using a pre-trained model.

#69 xinxiaoxiong closed 2 weeks ago
1
cell_count.csv & types.csv

#68 happywt opened 1 month ago
1
Training problem met: " if scale_min > scale_max: TypeError: '>' not supported between instances of 'NoneType' and 'NoneType' "

#67 LEZHOU26 closed 1 month ago
0
Data output clarification

#66 linatakemaru closed 1 month ago
0
Feedback Regarding the Bug that Causes Server Freeze When Predicting Larger Images

#65 name-used opened 1 month ago
2
Pip failed when using environment.yml

#64 linatakemaru closed 1 month ago
4
prepare_pannuke doesn't make types.csv

#63 donniekramer8 closed 2 months ago
1
UMAP of CellViT

#62 Liruieat closed 4 weeks ago
1
pydantic validation errors

#61 Lxltxpku closed 2 months ago
1
plot_results() function in "cell_segmentation/inference /inference_cellvit_experiment_pannuke.py"

#60 PingjunChen opened 2 months ago
0
Results of Inference

#59 mdsatria closed 2 months ago
1
Generate cell contours for the three folds of the Pannuke dataset

#58 CCSSMP closed 2 months ago
1
Dockerfile may be of use

#57 PingjunChen closed 3 months ago
1
edge_information["edge_patches"] can be None in cell_detection.py

#56 PingjunChen opened 3 months ago
1
20x Scale Bugs

#55 KompressorSC opened 3 months ago
6
Cell type label

#54 JiawenChenn closed 3 months ago
1
Do you find the training unstable for ViT-S based encoders?

#53 swarajnanda2021 closed 3 months ago
2
ROI Support

#52 KompressorSC closed 2 months ago
3
three-fold cross-validation

#51 CYYJL closed 3 months ago
1
Train with one nuclei type

#50 vadori closed 4 months ago
5
Error report for cellvit_cpp_net.py

#49 won5830 closed 5 months ago
2
Comparison to PLUTO paper?

#48 cgebbe closed 5 months ago
1
Issue with downsampling

#47 pkeller00 closed 5 months ago
3
About nuclear localization

#46 CYYJL closed 6 months ago
0
cell_detection_mp looking for files that don't exist

#45 bendmartin closed 6 months ago
1
XML annotations support

#44 thaomaidang opened 6 months ago
0
cannot location any cell

#43 RNA429 closed 6 months ago
6
Distributed training in CellViT

#42 CYYJL closed 7 months ago
1
MuNoSeg data set execution code

#41 CYYJL closed 7 months ago
6
Run Inference on CPU

#40 mzhoufulai closed 8 months ago
1
Application to non-contiguous patches

#39 florianbuettner closed 8 months ago
1
Adding final logs, fixing small bugs

#38 FabianHoerst closed 9 months ago
1
How to get model prediction for a single pannuke image?

#37 neoyinzhanghan closed 8 months ago
2
Can't reproduce the results of your paper

#36 ziwei-cui closed 11 months ago
4
When performing inference on the MoNuSeg dataset, the following code will ignore some regions of a image.

#35 windygoo closed 11 months ago
2
Predicting on 40x slides using 20x model

#34 bgginley opened 11 months ago
5
I have sent an email to you, please check it.

#33 windygoo closed 11 months ago
0
eval_every must equal to 1

#32 windygoo closed 12 months ago
1
How to calculate the STD metrics shown in Table 3 of your paper?

#31 windygoo closed 12 months ago
4
Tiled prediction does not return proper results for all tiles

#30 JLrumberger closed 12 months ago
25
Docker Image progress

#29 tomvars closed 8 months ago
2
CoNSeP embedding analysis code

#28 EmanuelSoda opened 1 year ago
1
The results dir is lost.

#27 windygoo closed 1 year ago
1
How about the segmentation performance of CellViT-SAM-H with CPP-Net decoder?

#26 windygoo closed 1 year ago
1