TIO-IKIM CellViT issues

TIO-IKIM / CellViT

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

https://doi.org/10.1016/j.media.2024.103143

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Train with one nuclei type

#50 Vadori opened 2 weeks ago
3
Error report for cellvit_cpp_net.py

#49 won5830 closed 3 weeks ago
2
Comparison to PLUTO paper?

#48 cgebbe closed 3 weeks ago
1
Issue with downsampling

#47 pkeller00 closed 1 month ago
3
About nuclear localization

#46 CYYJL closed 1 month ago
0
cell_detection_mp looking for files that don't exist

#45 bendmartin closed 1 month ago
1
XML annotations support

#44 thaomaidang opened 1 month ago
0
cannot location any cell

#43 RNA429 closed 2 months ago
6
Distributed training in CellViT

#42 CYYJL closed 2 months ago
1
MuNoSeg data set execution code

#41 CYYJL closed 3 months ago
6
Run Inference on CPU

#40 mzhoufulai closed 3 months ago
1
Application to non-contiguous patches

#39 florianbuettner closed 4 months ago
1
Adding final logs, fixing small bugs

#38 FabianHoerst closed 4 months ago
1
How to get model prediction for a single pannuke image?

#37 neoyinzhanghan closed 3 months ago
2
Can't reproduce the results of your paper

#36 ziwei-cui closed 6 months ago
4
When performing inference on the MoNuSeg dataset, the following code will ignore some regions of a image.

#35 windygoo closed 6 months ago
2
Predicting on 40x slides using 20x model

#34 bgginley opened 6 months ago
5
I have sent an email to you, please check it.

#33 windygoo closed 6 months ago
0
eval_every must equal to 1

#32 windygoo closed 7 months ago
1
How to calculate the STD metrics shown in Table 3 of your paper?

#31 windygoo closed 7 months ago
4
Tiled prediction does not return proper results for all tiles

#30 JLrumberger closed 7 months ago
25
Docker Image progress

#29 tomvars closed 3 months ago
2
CoNSeP embedding analysis code

#28 EmanuelSoda opened 8 months ago
1
The results dir is lost.

#27 windygoo closed 8 months ago
1
How about the segmentation performance of CellViT-SAM-H with CPP-Net decoder?

#26 windygoo closed 9 months ago
1
Question about the bPQ metric.

#25 windygoo closed 9 months ago
3
How about the segmentation performance on other benchmarks like CoNSeP, CPM-17?

#24 windygooo closed 9 months ago
4
How about the performance using ImageNet pre-tranied ViT?

#23 windygooo closed 9 months ago
1
Binary weight factors?

#22 GlastonburyC closed 9 months ago
1
Train a data set with only one tissue type

#21 Transformer-man closed 9 months ago
3
Inference speed improved by x100 for postprocessing,But there are still serious time-consuming

#20 464hee closed 3 months ago
5
Big svs Prediction

#19 Transformer-man opened 10 months ago
6
Error reported in execution example

#18 cowrturn closed 10 months ago
0
The official Panuke datset split?

#17 JackgreyL closed 10 months ago
3
Training is currently broken

#16 FabianHoerst closed 11 months ago
0
Loss not decrease on Lizard dataset

#15 Lewislou closed 11 months ago
3
How to predict multiple single PNG images, for example, the image size is 512 * 512

#14 Transformer-man closed 11 months ago
2
Training and inference transformations not found

#13 huangzhii closed 11 months ago
2
Hello, can you provide a smaller SVS file, such as 5000 * 5000, for testing

#12 Transformer-man closed 11 months ago
2
Running on multiple gpus

#11 Xujingkk closed 11 months ago
1
Applicability to other imaging modalities

#10 SJayYang closed 11 months ago
3
fix: :bug: Improving cell detection performance, fixed bugs, extendin…

#9 FabianHoerst closed 1 year ago
0
fix: :bug: Improving cell detection performance, fixed bugs, extendin…

#8 FabianHoerst closed 1 year ago
0
There is a problem with cell segmentation when predicting large images

#7 Transformer-man closed 12 months ago
14
How to use on other datasets?

#6 clissa closed 1 year ago
9
Inference speedup

#5 FabianHoerst closed 1 year ago
0
sweep init failed for training

#4 randy-tsukemen closed 1 year ago
1
When I use 3090 for prediction, it shows memory overflow。Model is CellViT-256.

#3 Transformer-man closed 1 year ago
3
python ./preprocessing/patch_extraction/main_extraction.py

#2 Transformer-man closed 1 year ago
19
can use in cytopathology？

#1 TingsongYu closed 1 year ago
1