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> **Background.** Gene expression is mediated by specialized cis-regulatory modules (CRMs), the most prominent of which are called enhancers. Early experiments indicated that enhancers located far fro…
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_QTL mapping_ is so far narrow synonym of _genetic mapping_ but is also applicable to other chromatin features such as histone modifications, chromatin accessibility, ...
_Solution 1:_ Leave as is …
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Hello,
With the capabilities in the new version, I am interested in using DIA-NN to search for histone PTMs from extracted histones. The since histone tails are highly decorated with PTMs, the main…
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Datasets for gene feature boundaries, or ncRNA
Data type/ details | method | PMID | First/last author | data source | status | Comment
-- | -- | -- | -- | -- | -- | --
intron/spliceosom…
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Hi @kimrutherford,
One thing that would be nice is to give some warnings for alleles and modifications where we know that the sequence is wrong, so that people know it when they see it in the websi…
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GO annotations provide links between proteins and GO biological processes and functions related to post-translational modifications of histones.
There is a process (https://www.ebi.ac.uk/QuickGO/te…
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Hello,
I am working with Chip-seq data (Histone modifications) from Salmo salar and I would like to ask you if it is possible to request the genome and genome size file for this organism?. Or any he…
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**What is this request referring to?**
Defining regions of nucleosome occupancy
**What is the name you would like SO to give the term?**
Nucleosome_occupancy
**What is the definition that you …
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Hi,
I am new to data analysis, we have been doing CnT for histone modifications and transcription factor. First I used the following alignment parameters:
`--local --very-sensitive-local --no-un…
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Hello,
While using `plotHeatmap` to create heatmap for a TF ChIP-seq dataset, I got inconsistent peak around TSS between 'TSS +-3kb region' and 'gene body(TSS-TES) region'.
![Snipaste_2023-06-27…