biocore-ntnu epic issues

biocore-ntnu / epic

(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER

http://bioepic.readthedocs.io

MIT License

31 stars 6 forks source link

issues

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Arabidopsis thaliana

#94 mtrejo96 opened 3 years ago
2
ChIP-seq WT vs mutants comparison

#93 nermah1 opened 3 years ago
2
Genomes cannot find

#92 tan5251 opened 3 years ago
0
Epic-effective: TypeError: cannot concatenate 'str' and 'NoneType' objects

#91 aboyd003 opened 4 years ago
5
Epic depricated

#90 parida007 opened 5 years ago
1
Stop coveralls from being picked up as a dependency

#89 rmsds closed 5 years ago
5
How does EPIC work ?

#88 nservant opened 5 years ago
6
Epic effective for

#87 parida007 opened 5 years ago
11
calculating memory requirements based on bam file size

#86 avilella opened 5 years ago
7
are read ids necessary in SE mode?

#85 avilella closed 5 years ago
1
conda still installs 0.2.9

#84 avilella closed 5 years ago
10
cannot recognize genome

#83 Wangcn81 opened 5 years ago
5
problem with output

#82 lucacozzuto closed 5 years ago
10
trackline and recommanded parameters

#81 nservant opened 6 years ago
9
epic and conda

#80 nservant closed 6 years ago
2
epic-merge throws an error of ValueError: Cannot convert NA to integer

#79 lucacozzuto closed 5 years ago
3
Best choice parameters

#78 JoseCorCab opened 6 years ago
1
run epic without control samples

#77 james-chuang closed 6 years ago
2
salmo salar genome request

#76 etarisal opened 6 years ago
11
Repair effective_sizes/dm6_50.txt

#75 palmercd closed 6 years ago
2
epic 0.2.9 compute_score_threshold.py:24 RuntimeWarning: divide by zero encountered in log

#74 grendon opened 6 years ago
6
No Releases

#73 dslater82 opened 6 years ago
2
Recommend publication

#72 Bohdan-Khomtchouk opened 6 years ago
1
epicR?

#71 Bohdan-Khomtchouk opened 6 years ago
5
where "chr1_before_find_islands.csv" file comes from?

#70 zhenyisong closed 6 years ago
2
Create bigwigs in epic-cluster

#69 endrebak opened 6 years ago
0
Add C. elegans genome?

#68 teresawlee opened 6 years ago
3
epic - bed formats

#67 sejmodha closed 6 years ago
2
epic-merge fails to run

#66 nw11 closed 6 years ago
4
Genome request

#65 sejmodha closed 6 years ago
4
cat: write error: Broken pipe

#64 romanhaa closed 6 years ago
7
-w parameter

#63 yeroslaviz closed 6 years ago
7
Can we run Epic without a control file?

#62 CodeInTheSkies closed 6 years ago
2
i2bw correction in the doc

#61 yeroslaviz closed 6 years ago
1
bigwig parameter with epic

#60 yeroslaviz closed 6 years ago
6
adding saccer3 to the genome list

#59 yeroslaviz closed 6 years ago
7
total_genome_length is not defined

#58 yeroslaviz closed 6 years ago
1
OverflowError for paired-end reads bedpe files

#57 yeroslaviz closed 6 years ago
20
Score & Fold_change? What do they mean and how to caculate them?

#56 zhenyisong opened 7 years ago
1
Concating dfs pandas error

#55 saycheeeeese closed 6 years ago
2
custom chromosomes with . in name

#54 saycheeeeese closed 7 years ago
5
Use unique filenames for --sum-bigwig option

#53 quantumdot closed 6 years ago
2
Clarify Read Inputs and Differential Peak Calling

#52 quantumdot opened 7 years ago
1
Effective Genome Size

#51 c-guzman closed 6 years ago
2
epic-effective cannot find jellyfish

#50 IanCodes opened 7 years ago
3
Andaconda Update

#49 c-guzman closed 7 years ago
6
-k FLAG

#48 c-guzman closed 7 years ago
2
Add type annotations for all functions

#47 DarwinAwardWinner closed 7 years ago
6
epic - is it usual that analyses take time?

#46 anishdattani closed 7 years ago
12
bioepic: OverflowError: cannot convert float infinity to integer

#45 anishdattani opened 7 years ago
4