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Here is what the nextflow version is currently outputting in a transXpress_results folder in the working directory of the pipeline execution (using rnaSPAdes as an example):
```
0226_Chattonella_sub…
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Hello!
I am trying to analyse differential gene expression in 83 samples split up into three groups following the protocol described by Pertea et al., 2016 (doi:10.1038/nprot.2016.095).
Now I h…
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**Is your feature request related to a problem? Please describe.**
VariantValidator, when having received too much work for one request, times out. This happens when, e.g.,
1. A large variant is sub…
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Hi
I have an error when running:
```R
txi = tximport(files, type="salmon", txOut=TRUE,
countsFromAbundance="scaledTPM",ignoreTxVersion = FALSE)
d = data.frame(sampleID = c…
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Hi,
I am using R version 4.3.1, R studio version 2023.6.1.524, isoformSwitchAnalyzeR version 2.0.1. I imported Salmon dataset via Tximeta and saved as RData.
I created aSwitchList using importRda…
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Many thanks for the great package
I am using the same database, version, etc but I am getting the following error, Please let me know why I might be getting the following error? How I could change t…
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Greetings,
My code for deduplicting my paired end data:
##Step-1:(barcode/umi extraction)**
```
umi_tools extract -I abc.fastq.gz --bc-pattern=CCCCCCCCNNNNN --read2-in=cba.fastq.gz --stdout=proc…
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### Label
RAB18 Deficiency
### Synonyms
Warburg Micro Spectrum
### Synonym type
None
### Definition
Per GeneReviews (https://www.ncbi.nlm.nih.gov/books/NBK475670/): “RAB18 defi…
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Hi @kvittingseerup,
I am undertaking a pretty straightforward analysis - 3 treated (CRS) samples vs 4 control samples using Nanopore cDNA data.
Using version 2.1.12.
I essentially followed t…
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Hello,
Is there any way to extract UTR length when there is a shortening or a lengthening of the UTRs?
Thanks in advance.