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How do isoforms relate to genotypes?
This genotype looks like it's isoform specific because the three isoforms of prp10 have different sequences:
https://www.pombase.org/genotype/prp10-1-A1089V,S1…
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First and foremost, I would like to thank you for developing the fantastic DIA-NN tool.
I am currently working on a project where I aim to distinguish and quantify isoforms produced by alternative …
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## Details
**Created by:** myGlygen
**Feedback from:** myGlyGen@gmail.com
**Assigned to:** myGlygen
**Priority:** normal
[Open Note](https://app.pageproofer.com/to/note/351188)
## Note
> I think…
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Related to #https://github.com/geneontology/neo/issues/102
Swiss-Prot curators propose that when searching on isoforms, the canonical (ie, the one without any hyphens) shows up first. That would av…
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Hi there!
I would like to validate experimentally some fused genes. For doing that, I should keep the most expressed isoform for each gene. I would like to know how FusionInspector decides the iso…
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Hi @EricKutschera
When I ran ESPRESSO, the abundance file reported around 13,000 genes, but rmats-long produced a `differential_genes.tsv` file with only 9,800 genes. I'm a bit confused about how …
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Hello,
Is it possible to call provista to get the annotations based on an isoform sequence please?
e.g.:
https://www.uniprot.org/uniprot/P00533/protvista
But
https://www.uniprot.org/uniprot/P0…
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### Ask away!
Hi, I would look at transcript usage but all transcripts are "unknown".
The file `transcript_processed_feature_bc_matrix/features.tsv.gz` contains only "unknown" transcripts.
```…
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I am trying to use the beta functions
![image](https://github.com/smith-chem-wisc/Spritz/assets/21457/a4c3de3b-a926-4a0d-99c1-083b305ddcab)
but facing this error (log below), any ideas how to pr…