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Hi, I am curious to know how `runMiDAS()` selects top-associated associated alleles covariates in stepwise conditional testing (`conditional = TRUE`). Is it a p-value threshold selection? Can you exp…
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Hi Doug,
I am running into an error when LDAK is reading in the covariates file. I've tried changing the file from tab to space separated, removing any non-alphanumeric values from the variable nam…
sahwa updated
1 month ago
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- Outlier detection
- SNP/environment
- Linkage disequilibrium methods
- Neutrality tests
## By marker type:
- [x] SNP
- [ ] Sequence
- [ ] Microsatellite
Please refer to the issue number when submit…
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Hi, I am trying to add the non-linear regression tendency line to the Linkage Disequilibrium (LD) plot. I followed the manual document of PopLDdecay and got the plot. However, I am looking to make plo…
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We are running the latest LDAK6 in a Red Hat 8.8 cluster, using the Slurm scheduler. When the job runs, we get the following output:
(base) [laip@esplhpccompbio-lv01 MegaPRS]$ cat JOB1003351.out
…
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I would like to start generating some real examples of packages
if @Ilia-Kosenkov and @clauswilke could help.
We could, for example:
* Show memory mapped files with parallel parsing (such as JS…
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Hi Doug,
I'm currently using LDAK (Version 6) for my analysis, and I've encountered an error that I'm struggling to resolve. Here are the details of the issue:
```
-- -- -- -- -- -- -- -- -- -- -- …
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ConPair software uses 7387 pre-selected informative genomic markers based on following criteria.
SNVs (easier to genotype from sequencing data)
exonic (to allow comparison of exome and WGS samples…
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Hello,
I am not being able to install SweeD in my Linux system. I cloned the repostiory from github and used the command `make -f Makefile.gcc` to install SweeD. However I am getting the follo…
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I'm wondering that the meaning of R2 in stat model based on a bed file.