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**From:** Maxime Moog
**Email:** maxime.moog@tuni.fi
**Server IP:** 10.142.0.14
**Msg:** Hello, I have been trying to use your platform to analyze some data and no matter my characteristics or the …
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Nice work to follow. However, I didn't see the comparison against traditional community detection algorithms, such as louvain, LPA, infomap etc. Any opinions about the pros and cons between the embedd…
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I would like to visualize a dendrogram from scanpy.pl.heatmap() without the heatmap, grouped by louvain clusters. It would be nice to have the louvain clusters as the x-axis and the y-axis representat…
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Hi,
I have learned about this nice method recently, and have been exploring it since then. I have a question about some weird results I am getting with some high dimensional gene expression dataset…
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The method prints a lot of logs even though the verbose parameter is set to False:
```
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Not clear to me what the color of the stroke around each profile picture means.
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Another error I get and have no idea how to solve is when using the Wilcoxon rank-sum for testing for differential gene expression:
`sc.tl.rank_genes_groups(adata, 'louvain', method='wilcoxon')
sc…
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Hello, I am trying to analysis the CITE-seq data using protaccel totally following the 'CITE-seq protein acceleration analysis' in the github.
I got the following error when I ran "[cluster_ID, num…
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Hey,
I just want to use the COVET method to compute niches on spatial data. I have several batches in my data. Should I just use `compute_covet` function with `batch_key` to get the `COVET_SQRT` re…
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### What are you trying to do?
Hey all, part of my code uses the Louvain algorithm implemented in gonum.
I've encountered an infinite loop that might happen.
### What did you do?
My code cre…