JonathanShor DoubletDetection issues

JonathanShor / DoubletDetection

Doublet detection in single-cell RNA-seq data.

https://doubletdetection.readthedocs.io/en/stable/

MIT License

79 stars 23 forks source link

issues

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`IndexError: list index out of range`

#157 danli349 opened 1 year ago
0
Input for mixed species experiments

#156 rjg2186 opened 1 year ago
0
verbose = False

#155 Laolga opened 1 year ago
1
A bug? Random seed 0 will never be set.

#154 Christina-hshi opened 2 years ago
0
Dev 4.2

#153 adamgayoso closed 2 years ago
0
[DO NOT MERGE] Dev 5.0

#152 adamgayoso opened 2 years ago
0
Dev 4.1

#151 adamgayoso closed 2 years ago
0
remove lock file

#150 adamgayoso closed 2 years ago
0
Bump pywin32 from 300 to 301

#149 dependabot[bot] closed 2 years ago
1
Bump babel from 2.9.0 to 2.9.1

#148 dependabot[bot] closed 2 years ago
1
Bump urllib3 from 1.26.2 to 1.26.5

#147 dependabot[bot] closed 2 years ago
1
Bump notebook from 6.1.5 to 6.4.1

#146 dependabot[bot] closed 2 years ago
1
update docs

#145 adamgayoso closed 2 years ago
0
Bump ipython from 7.16.1 to 7.16.3

#144 dependabot[bot] closed 2 years ago
0
Loading in raw matrix

#143 BridgetPK closed 2 years ago
2
Memory usage increases when using scanpy clustering

#142 kaylahardwick opened 3 years ago
2
Memory Error when running.

#141 Mike0117 closed 3 years ago
0
Docs again

#140 adamgayoso closed 3 years ago
0
Dev 4.0

#139 adamgayoso closed 2 years ago
0
Docs

#138 adamgayoso closed 3 years ago
0
Update reference on readme

#137 adamgayoso closed 3 years ago
0
move to poetry for dist, remove excess code, use pip installable pheno

#136 adamgayoso closed 3 years ago
1
Reproducibility issue

#135 Jayjay601 closed 3 years ago
0
readme update

#134 adamgayoso closed 4 years ago
0
List of barcode duplets

#133 ibseq closed 4 years ago
1
got "list index out of range" error

#132 jchenpku closed 3 years ago
2
Dev v2.5.2

#131 adamgayoso closed 4 years ago
1
Neighbor graph should only be calculated when not using PhenoGraph

#130 adamgayoso closed 4 years ago
0
Error for doublet detection

#129 lh12565 closed 4 years ago
4
Phenograph params return NA on PBMC8K

#128 TomKellyGenetics closed 4 years ago
3
Fix defaults

#127 adamgayoso closed 5 years ago
0
make readthedocs pass

#126 adamgayoso closed 5 years ago
1
Dev v2.5

#125 JonathanShor closed 5 years ago
0
Dev v3.0 -> 2.5

#124 adamgayoso closed 5 years ago
1
Verbosity

#123 JonathanShor closed 5 years ago
1
Create coding standards

#122 adamgayoso closed 5 years ago
5
Documentation and Package Restructure

#121 adamgayoso closed 5 years ago
5
Allow alternative clustering

#120 adamgayoso closed 2 years ago
3
Integrate scanpy for more efficient clustering and general functionality

#119 adamgayoso closed 5 years ago
3
Sparse raw counts and UMAP

#118 adamgayoso closed 5 years ago
1
Reduce memory by storing raw_counts as sparse

#117 adamgayoso closed 5 years ago
0
Vectorize synths

#116 adamgayoso closed 5 years ago
0
NaN in doublets score

#115 hwlim closed 5 years ago
2
biorxiv submission?

#114 yueqiw closed 3 years ago
2
Cluster of origin for doublets and results interpretation

#113 danshu closed 5 years ago
2
Removing default thresholds

#112 adamgayoso closed 3 years ago
3
Dev v2.4

#111 adamgayoso closed 6 years ago
1
Improve plots

#110 adamgayoso closed 6 years ago
0
return PhenoGraph clustering in tsne plot

#109 adamgayoso closed 6 years ago
0
scanpy normalization

#108 adamgayoso closed 5 years ago
8