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JonathanShor
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DoubletDetection
Doublet detection in single-cell RNA-seq data.
https://doubletdetection.readthedocs.io/en/stable/
MIT License
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return PhenoGraph clustering in tsne plot
#109
adamgayoso
closed
6 years ago
0
scanpy normalization
#108
adamgayoso
closed
5 years ago
8
Vectorize synthetic doublet creation
#107
adamgayoso
closed
5 years ago
1
Random seed
#106
adamgayoso
closed
6 years ago
0
setting random seed for reproducibility?
#105
yueqiw
closed
6 years ago
3
tsne plot assumes raw_counts is np.ndarray
#104
adamgayoso
closed
6 years ago
1
Threshold plot fix
#103
adamgayoso
closed
6 years ago
0
Make the log10 P values in threshold plot more intuitive?
#102
yueqiw
closed
6 years ago
19
Log p-values
#101
JonathanShor
closed
6 years ago
0
Clean setup
#100
JonathanShor
closed
6 years ago
0
Log p val
#99
adamgayoso
closed
6 years ago
0
Any systematic validation/benchmarking of this algorithm?
#98
yueqiw
opened
6 years ago
13
Fix masked labels filling for ambiguous cells
#97
adamgayoso
closed
6 years ago
0
Fast(er) Normalize
#96
JonathanShor
closed
6 years ago
0
Conforms to #68 when n_iters == 1
#95
JonathanShor
closed
6 years ago
0
memory requirement
#94
lpantano
closed
6 years ago
4
Doublet estimation with Jurkat cell data
#93
joonlee3
closed
6 years ago
1
Fast normalize
#92
adamgayoso
closed
6 years ago
0
Moved all reqs to requirements.txt and out of setup.py
#91
adamgayoso
closed
6 years ago
0
2.1 review
#90
JonathanShor
closed
6 years ago
0
Dev v2.1
#89
adamgayoso
closed
6 years ago
0
No downsampling
#88
adamgayoso
closed
6 years ago
0
Input formats
#87
adamgayoso
closed
6 years ago
2
Viz v2.1
#86
adamgayoso
closed
6 years ago
0
Keeping data-heavy objects after fit
#85
JonathanShor
opened
6 years ago
0
Set phenograph parameter 'prune'=True by default.
#84
JonathanShor
closed
6 years ago
1
Make prune=True default
#83
adamgayoso
closed
6 years ago
0
notebook complies with 2.0 api
#82
adamgayoso
closed
6 years ago
0
v2.0 API Stablized
#81
JonathanShor
closed
6 years ago
2
Adds normalizer parameter.
#80
JonathanShor
closed
6 years ago
0
Api 2.0
#79
JonathanShor
closed
6 years ago
0
Adds attribute top_var_genes.
#78
JonathanShor
closed
6 years ago
0
Removed requirement that cluster IDs be bumped up if -1 cluster
#77
adamgayoso
closed
6 years ago
0
Api 2.0
#76
JonathanShor
closed
6 years ago
0
-1 cluster and updated docstring for BoostClassifier
#75
adamgayoso
closed
6 years ago
1
Run on command line
#74
adamgayoso
closed
5 years ago
2
Plug-in normalization method
#73
adamgayoso
closed
6 years ago
0
Mini viz suite
#72
adamgayoso
closed
6 years ago
0
Input types for count matrix
#71
adamgayoso
closed
6 years ago
2
Pbmc 8k vignette
#70
adamgayoso
closed
6 years ago
0
Installable Packaging
#69
JonathanShor
closed
6 years ago
0
Improve never clustered warning message
#68
JonathanShor
closed
6 years ago
1
ENH: reorg into package, make installable
#67
ambrosejcarr
closed
6 years ago
0
ENH: reorg into package, make installable
#66
ambrosejcarr
closed
6 years ago
1
Correct 1 iter & prune warning logic.
#65
JonathanShor
closed
6 years ago
0
Verbose options
#64
JonathanShor
closed
5 years ago
4
v1.3 Voting Classification
#63
JonathanShor
closed
6 years ago
1
Voting scheme
#62
JonathanShor
closed
6 years ago
0
Conform to sklearn estimator API
#61
JonathanShor
closed
6 years ago
2
Exclude unclustered cells from deciding doublets.
#60
JonathanShor
closed
6 years ago
0
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