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@oruebel Yesterday we uploaded a file that was acquired on a MALDI LTQ/XL (Thermo) and had been converted to mzML using msconvert with default parameters. BASTet correctly identified the unique m/z v…
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[`_check_valid_name`](https://github.com/scverse/spatialdata/blame/95d69ff7138305ee2a530bcc45f8460a06e8118b/src/spatialdata/_core/_elements.py#L34-L40) implemented stricter naming constraints in https…
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**Topic name:** < Lipidomics >
**Short description:** < the systematic identification and characterization of cellular lipid molecular species, lipid derivatives, and downstream lipidome interacti…
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If a Branch containing a std::vector is encountered Fatal is raised:
Fatal: 0 violated at line 2030 of `/home/maldi/belle2FW/externals/v00-05-09/src/root/io/io/src/TStreamerInfoActions.cxx'
aborting
…
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Dear Karsten Wüllems,
I’m a Ph.D student in France on Brassica napus (rapeseed) specialized metabolites against pathogens. I want to apply your pipeline “Analysis of GRaph mapped Image data NEtwor…
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I tried opening my file(corrected_maldi_LPA_16_0_.nii.gz) with imagej js web version. But I am not able to open it. I can open this file with ImageJ desktop version without any errors.
Link for the…
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Very elegant work, but I think you omitted a key procedure about how to translate a raw data file of MALDI (usually as imzML format)into h5ad object, which can be recognized by scanpy. Could you compl…
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http://photos.labwrench.com/equipmentManuals/3117-1078.pdf looks like I missed another big player.
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Hi. I have standalone Visium data and Mass spec data (Bruker) from the same tissue block (mouse colon). Would it be possible to use the ```semla``` package to get common x-y co-ordinates from both dat…
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`"n_init should be > 0, got {self.n_init} instead."`
The above error came due to
`cluster = KMeans(init="random", n_clusters=n_clusters, n_init="auto", max_iter=300).fit_predict(cube)` in `data_o…