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ludvigla
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Updated UpdateSeuratForSemla (40)
#43
jemorlanes
closed
1 day ago
0
Spots removed because they are outside the scale range
#42
Maximus0212
opened
2 weeks ago
1
Error in `UpdateSeuratForSemla()`: ! Only 'SlideSeq' and 'VisiumV1' are currently supported. Got VisiumV2 Run `rlang::last_trace()` to see where the error occurred.
#41
wuxiangning
opened
3 weeks ago
4
How to Convert a Merged Seurat Object with Multiple Samples to a Usable Semla Object?
#40
yangxinzhi
opened
1 month ago
8
Fix regionnbs bug
#39
lfranzen
closed
1 month ago
1
Adding grid functionalities for plotting
#38
jemorlanes
closed
1 month ago
1
error in MapMultipleFeatures
#37
renyzh5
opened
1 month ago
2
RegionNeighbors() returns 0 neighbors.
#36
suerle
opened
2 months ago
2
Advice on which assay to use to run NMF on integrated Visium samples
#35
whitneyt1
opened
2 months ago
1
Corrected UpdateSeuratFromSemla:
#34
jemorlanes
closed
3 months ago
0
UpdateSeuratFromSemla
#33
jemorlanes
closed
3 months ago
0
how to load STpipeline output to semla
#32
psecekartal
opened
3 months ago
1
How to get the transformed images by semla into the original Seurat object?
#31
vagm110901
closed
1 month ago
2
is there the ability to look at neighbors two spots away?
#30
whitneyt1
closed
5 months ago
2
What is the right coordinate order of tissue_positions_list.csv (without column names)?
#29
huiyijiangling
opened
5 months ago
1
Will semla be compatible with HD visium?
#28
NiklausZZZ
closed
6 months ago
13
Overlay categorical features
#27
katiestoker
closed
6 months ago
2
"LoadImages()" can not align the spots with the HE image.
#26
Famingzhao
closed
6 months ago
2
Problem with `override_plot_dims`
#25
liuxiawei
closed
6 months ago
2
x-y co-ordinates from data types
#24
cathalgking
opened
9 months ago
6
Update spatial autocor and other things
#23
lfranzen
closed
9 months ago
0
Calculate a P-value for correlation generated by the CorSpatialFeatures function
#22
diala-ar
closed
1 month ago
3
Allowed for .parquet coordinate files
#21
jemorlanes
closed
11 months ago
0
Error in MapLabels.Seurat()
#20
vgilbart
opened
11 months ago
7
Issue with point size not keeping scale with image dimensions
#19
ejscience
opened
1 year ago
2
SubsetSTData and MergeSTData
#18
EddieLv
closed
6 months ago
1
Error installing semla because of the get_array_rotation.R
#17
LisaWang2022
closed
1 year ago
1
spatial data from Staffli to Seurat images slot
#16
VenomEvoDevo
closed
1 year ago
3
keep updated with the main branch
#15
syyyChen
closed
1 year ago
0
neighborhood mapping error
#14
chrkuo
closed
1 year ago
6
load image error
#13
chrkuo
closed
1 year ago
4
filtering normalization etc
#12
chrkuo
closed
11 months ago
2
How to adapt to spatial data not from V10
#11
leiLQ
closed
1 year ago
1
How to convert Seurat Object to Semla format?
#10
ElyasMo
closed
1 year ago
2
Spot coordinates like the STutility?
#9
TaopengWang
closed
1 year ago
2
How to build a semla object without h5 file？
#8
Cambyses-Chen
closed
1 year ago
3
Error with LoadImages and MapFeaturesSummary
#7
AlinaO90
closed
1 month ago
2
Error in `geom_point()`: ! Problem while converting geom to grob. ℹ Error occurred in the 1st layer.
#6
whitneyt1
closed
1 year ago
3
Feature request - barcode level metadata during loading
#5
williamsdrake
closed
11 months ago
4
Any advice about intereacting with Seurat?
#4
yunbokai
closed
1 year ago
11
'Staffli' object missing
#3
YangXuuu
closed
1 year ago
6
Package download issue
#2
YangXuuu
closed
1 year ago
5
Error loading image
#1
TeodoraTockovska
closed
1 year ago
6