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Initial mapping of DMS slots are underway. After issues #748 and #749 have been completed:
- [x] Finalize mapping spreadhseet including:
- [x] Add MassSpectrometryConfiguration ids to all MassSpec…
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In my local clone of the `berkeley-schema-fy24` repo, when I run `$ make squeaky-clean all`, the console output begins with an error message:
```console
$ make squeaky-clean all
Error: open local…
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I tried to parse a Tide pepXML file, but failed. The error is "Failed to parse the PepXML file, please check your file." I suspect that this is because our format has changed since you first evaluate…
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see issue: https://github.com/microbiomedata/nmdc-schema/issues/1570
In issue linked above, discussed creating a `Calibration` class. Will need to change name of slot from `has_calibration` which i…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Lu-Group-UKHD/SmartPhos
Confirm the following by …
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In order to submit change sheets for the current `MassSpectrometry` instances in Mongo, we will need to include mapping any `has_calibration` info for instances that it applies to. This has not yet be…
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One of the changes in modeling in berkeley was to support projects that were had multiple instrument runs (of the same type) which should be analyzed together. Records are linked with part_of, for the…
aclum updated
1 month ago
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In berkeley-schema-fy24, some of the syntax declarations on ids of classes result in extra parentheses during minting on the berkeley-schema nmdc runtime. This results in badly minted ids for instance…
kheal updated
2 months ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/MetaboComp/batchCorr
Confirm the following by edi…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Vitek-Lab/MSstatsBioNet
Confirm the following by …