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No need to run meryl for OBT (OBT is disabled).
No need to run meryl for OVL (genome.nmers.ovl.fasta exists).
----------------------------------------START Sun Dec 18 16:40:25 2022
/es01/home/liljn…
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http://sco.h-its.org/exelixis/web/software/pear/doc.html
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I am running MaSuRCA on a cluster which supports SLURM. what should I do If I want to submit multiple jobs for hybrid assembly with illumina and pacbio?
nm100 updated
6 years ago
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Hi,
I tried to run EviAnn with bam alignments, protein seq, and fastq reads as evidence to annotate a genome but keep getting the following msg:
ls: cannot access 'tissue*.bam': No such file or di…
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Hello MaSuRCA team,
I used MaSuRCA (3.2.7) to hybrid assemble Brassica genome, and i meet the following two errors:
**./assemble.sh: line 158: work2.1/readPlacementsInSuperReads.final.read.super…
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Hi,
I am getting the below segmentation fault from buildPosMap. I am running MaSuRCA 3.2.6.
The assembler continues despite this issue and appears to complete correctly so I assume it is not a cri…
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The `install.sh` script [allows you](https://github.com/alekseyzimin/masurca/search?q=DEST&type=Commits) to externally define the `DEST` variable to specify a different installation root path for masu…
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Dear @alekseyzimin,
I always get this error while running hybrid Masurca assembly on an ubuntu wokstaion with 1 TB RAM. Although, the warning suggests that the assembly can proceed normnally, it d…
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Hi @rjchallis @epaule,
I have problem with loading mapping data and vizualization in bloobtools. My command was - ./blobtools2/blobtools add --cov ~/Desktop/bioinformatics/K17_4_S9_L1L2_R1.fastq.gz…
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In the mascura 4.0.9 code:
~/90days/build/MaSuRCA-4.0.9
grep '4.0.5' */*/*/* 2>/dev/null
...
global-1/SuperReads/src/masurca:my $version_str="version 4.0.5";
...
So after build 0f 4.0.9 so…