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Hello,
I am using the qsiprep-docker wrapper version: 0.15.4.
I've successfully run the preprocessing for my data with the following command:
```
qsiprep-docker MY_PATH/data_experiment/ MY_PAT…
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Hi, I ran the following command to process the T1w image:
`docker run --gpus '"device=0"' --rm -v /home/ANAT/Data/batch01:/InfantData --user 1019:1017 ibeatgroup/ibeat_v2:release205 --t1 InfantData/S…
ZZLXY updated
2 months ago
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- [ ] Find labels in template space (possibly following linked transforms to MNI space)
- [ ] Warp labels to session / subject space, and correct errors (eg, mask)
- [ ] Generate ROI stats
T…
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The current docker image [uses CentOS 7 as a base image](https://github.com/freesurfer/freesurfer/blob/dev/Dockerfile), however CentOS is at end of life.
The base container works fine, but cannot i…
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Hi, when I run MNI with a default setting in windows ver. pyHFO in my SEEG files, I get the following errors.
Do you think anyone could fix this?
Thank you very much for your consideration.
Lo…
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the file "mni.nii" is a text file and not a nifti, its contents are:
> version https://git-lfs.github.com/spec/v1
oid sha256:473c47706dae25aa9e77b3bee4917cc906e9cf9f54eb0a93b5b5c6a4c7ea5b9f
size …
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See discussion #3074.
We need to better explain:
- the fact that the atlases were generated using a specific version of the MNI template (for example by listing that version in the docstrings o…
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@SachinPawaskarUNO Here are the lists for MNI; one of bones to exclude (including the additional we discussed on the phone - hair, tissue, etc.), the other of bones to include.
[Bone list for MNI.xls…
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Hi,
I use fMRIprep which is working well with most of my MRI data. But I have an issue with a few patients when using fMRIprep. Coregistration is ok and no issue reported when looking at the html …
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Dear fmriprep experts, we recently encountered an issue with our T1 skull stripping using fMRIprep. Part of dura mater was included in the brain mask leading to very poor EPI-T1 registration.
The com…