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Hi @lgeistlinger would you mind giving the package a first-look and provide me with any edits you may have please?
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Hello,
Im trying to see if is possible to get the effect of multiple mutations into a single protein structure. Im defining `seq = "MdEvVpQpLrVyQdYaKv"` and `mut_info = "E1R:Q4D"`, but Im getting …
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Should I use the predictive mutational effect script directly, or should I first fine-tune Saprot with my own mutation data and then use the fine-tuned version? Thank you.
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My data set is a protein sequence, such as "ABCDLSGFNKZDF", which does not involve a 3D structure and has no pdb file. How should I convert it into a SA sequence? Thanks
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ccb-hms/ProteinGymR/
Confirm the following by edi…
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For the assay type -stratified evaluation of Mutational Effect prediction models, I noticed that the two datasets, SPIKE_SARS2_Starr_2020_expression and SPIKE_SARS2_Starr_2020_binding are categorized…
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貼吧活動：(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
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Query: G21718C, T22928C, C25714T
Collected: 2023-04-29 and 2023-05-12
Normally I wouldn't make an issue with only 2 sequences, but since this is pretty much the xbb.1.9.1 equivalent of xbb.1.9.2…
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@Haddox had the idea that an easy way to ensure consistent trees from `antigen` while also storing sequence information would be to just add a sequence filed to `GeometricPhenotype` to start.
Down …