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Hi @jodyphelan
On TBprofiler version 4.4.1, when I created a custom database, the following errors occurred. I can't resove it ,could you please give some help? Thank you!
(TBprofiler_4.4.1_old) …
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If I take a look at the current Galaxy cgMLST options, I can see an option for **Mycobacterium tuberculosis/bovis/africanum/canettii** and **Klebsiella pneumoniae/variicola/quasipneumoniae** (https://…
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Hi
I am trying to do an alignment of 190 Mycobacterium tuberculosis genome sequences using parsnp. It seems to work fine and creates an .xmfa file. However it doesn't recruit all the genome fasta fi…
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## Describe the issue
We noticed a variant, a single base insertion after the first position of a gene, getting annotated as an upstream_gene_variant with respect to that gene. The distance is then…
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Hi Amir,
I understand gene_data.csv contains ~4000 genes which have at least one mutation in the data.
Where can i find the names of these genes?
Many thanks,
Fernando
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A first attempt to the problem was made here https://github.com/mtb-bioinformatics/mtbseq-nf/issues/31
However, refererring the[ manual for MTBseq](https://github.com/ngs-fzb/MTBseq_source/blob/v1.…
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I don't know if this a bug or a feature, but I found a strange thing with Bracken. I am analysing human microbiome data, from nasal and gut microbiome, produced by shotgun sequencing. I use kraken2 fo…
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Chris has left a lot of Editor notes on Mondo terms when he created the ontology. The list of terms with editors notes is [here](https://docs.google.com/spreadsheets/d/1atfmtwXHzru6fXoxwZrkShNV8HWppFN…
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So this maybe just an FYI for these entities: PATHGO_0000103 (host toll-like receptor signaling disruption factor) AND PATHGO_0000233 (disrupts host toll-like receptor signaling). This is related to i…
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**Summary !!!**
- **BioModel Name**: Ye2021, Identification of active molecules against Mycobacterium tuberculosis with ML
- **BioModel Tag**: fair AIML, Machine learning model
- **Metadata …