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**Describe the bug**
Hi, no specific bug... I just can't get AlphaPept to run! I have a collection of mzML files from PXD003881 converted using ThermoRawFileParser that I am trying to analyze with …
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We have over 20,000 mzML data files and their corresponding quant files. When we tried to use Diann to merge them into a protein matrix, we encountered the error message "/var/spool/slurmd/job532496/s…
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**Is your feature request related to a problem? Please describe.**
I have some data that have a bad mass calibration but still need to use it for analysis. For full transparency in publication and p…
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File format conversion can be made with the compass software, see https://github.com/rformassspectrometry/RforMassSpectrometry.org/issues/18#issuecomment-1834408893
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When I visited the Boecker lab, I noticed that the raw data overview was very slow on GC-Orbitrap mzML files analyzed by Jonas @joXemMx. I made a comparison to our own mzML file, which is larger and c…
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Hi,
I am using DIA-NN 1.8.1 in Windows 11 Pro with 13th Gen Intel(R) Core(TM) i7-13700 (processors 16, threads 24) for DIA analysis of 51 Thermo raw data files. First attempts were successful explo…
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Good day.
Is there any intention or estimated time for implementation of access to Ion Mobility data from Bruker devices?
I use Pyteomics regularly and now I'm starting to face some TIMS TOF dat…
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### Description of the bug
@daichengxin we have a new version of diann 1.9.1dev:
- Docker: `docker pull ghcr.io/bigbio/diann:1.9.1dev`
- Singularity: https://ftp.pride.ebi.ac.uk/pub/databases/pri…
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Manuel schrieb mir am 23.2.17:
> OpenMS bietet tools für LC-MS/MS daten an. Jetzt hab ich es geschafft meine GC-MS daten in mzML umzuwandeln, aber der featurefindermetabo hat probleme die zu lesen…
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This tool does not handle exceptions when two mzML files can not be aligned.
![image](https://github.com/OpenMS/OpenMS/assets/72203175/75ee1f32-db46-44cf-97ca-f6fbe77822ac)
E.g. in this case ali…