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ClavelLab
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maldipickr
Dereplicate And Cherry-pick Mass Spectrometry Spectra
https://clavellab.github.io/maldipickr/
GNU General Public License v3.0
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move the Quickstart to a specific vignette to have a "Get started" page generated for the website
#48
cpauvert
opened
2 months ago
0
bump Node.js version to 20 for Github Actions
#47
cpauvert
closed
2 months ago
0
add Targets factories to ease {maldipickr} workflow
#46
cpauvert
opened
3 months ago
1
add function to gather spectra checks stats
#45
cpauvert
opened
3 months ago
0
add issue templates
#44
cpauvert
closed
4 months ago
1
add logo in svg in man/ to be able to edit
#43
cpauvert
closed
4 months ago
0
missing filtering on bruker log score for identification-based delineation
#42
cpauvert
closed
4 months ago
0
Release maldipickr 1.3.0
#41
cpauvert
closed
8 months ago
0
implement `{maldipickr}` using the RforMassSpectrometry improved codebase
#40
cpauvert
opened
8 months ago
0
read in mzML files instead of fid/acqu proprietary format
#39
cpauvert
opened
8 months ago
1
deprecate `rds_prefix` option in `process_spectra()` because of `{targets}`
#38
cpauvert
closed
8 months ago
0
error non-unique values when setting 'row.names' in `process_spectra()`
#37
cpauvert
closed
8 months ago
1
Release maldipickr 1.2.0
#36
cpauvert
closed
10 months ago
3
add codecov token to fix coverage issue #34
#35
cpauvert
closed
10 months ago
1
codecov coverage not updated despite GitHub Actions CI/CD success
#34
cpauvert
closed
10 months ago
0
set min R version (fixes #31)
#33
cpauvert
closed
10 months ago
3
Implicit and undocumented use of single-linkage clustering
#32
cpauvert
closed
10 months ago
0
set a minimum R version
#31
cpauvert
closed
10 months ago
0
Refactor vignettes using diataxis principles
#30
cpauvert
opened
11 months ago
0
improve handling of empty spectra
#29
cpauvert
closed
8 months ago
1
Release maldipickr 1.1.1
#28
cpauvert
closed
11 months ago
2
merge_processed_spectra.R
#27
cpauvert
closed
10 months ago
0
pick_spectra.R
#26
cpauvert
closed
10 months ago
0
process_spectra.R
#25
cpauvert
closed
10 months ago
1
rename functions to `verb_concept()`: e.g. `similarity_to_clusters()`
#24
cpauvert
closed
11 months ago
0
Add additional tests
#23
cpauvert
closed
10 months ago
0
add Strejcek paper in DESCRIPTION
#22
cpauvert
closed
11 months ago
0
Use temporary dirs and files for examples
#21
cpauvert
closed
11 months ago
4
Remove the CHANGELOG and stick to the R practice of NEWS
#20
cpauvert
closed
11 months ago
0
add test to the symlink portion of `import_biotyper_spectra`
#19
cpauvert
closed
11 months ago
1
Find connected components without `{igraph}` or `{tidygraph}`
#18
cpauvert
closed
11 months ago
0
`to_pick` column is masked in the vignette
#17
cpauvert
closed
11 months ago
0
Prepare for a CRAN submission
#16
cpauvert
closed
11 months ago
0
add a quickstart section in README with examples
#15
cpauvert
closed
11 months ago
0
Add a CHANGELOG
#14
cpauvert
closed
1 year ago
0
picking function using the biotyper report
#13
cpauvert
closed
11 months ago
1
output the `read_biotyper_report()` in wide AND long format
#12
cpauvert
closed
12 months ago
3
`reframe()` instead of `summarise()` when dplyr > 1.1.0
#11
cpauvert
closed
1 year ago
0
improve examples on merging different runs `merge_processed_spectra`
#10
cpauvert
closed
1 year ago
0
warning in `pick_spectra` example with summarise/reframe when using the dry-run
#9
cpauvert
closed
1 year ago
1
R code too wide in the vignettes
#8
cpauvert
closed
1 year ago
1
use a standardised format to store the raw spectra and the processed spectra
#7
cpauvert
opened
1 year ago
1
silent fail when metadata did not merge with cluster_df in the picking function
#6
cpauvert
closed
1 year ago
1
Add a function to decide whether the spectra is a reference spectra
#5
cpauvert
closed
1 year ago
0
Add the picking function
#4
cpauvert
closed
1 year ago
0
Set up the pkgdown website
#3
cpauvert
closed
1 year ago
1
Write a walkthrough in the vignette
#2
cpauvert
closed
1 year ago
1
Document the dataset used in the examples
#1
cpauvert
closed
1 year ago
1