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Hi. There is a problem with the medaka workflow.
If I remove barcode71 (a really bad sample), the pipeline finish. If I keep it, the pipeline krasches. It seems like longshot with the -A flag does no…
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Hello
I'm a little confused about the difference between the primers with the same number but with the "alt" suffix. Should i use these alt primers instead of the original one? (nCoV-2019_89_LEFT_a…
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I have been running a bunch of viruses in parallel using --no-longshot from the same directory. Medaka appears to very briefly have a tmp file that is not uniquely named (tmp.medaka-annotate.vcf), and…
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Hello everyone,
New user here. I have been trying to run artic pipeline here.
Right after align_trim, I get lines and lines of error message and assembly finishes. Even though I have viral assem…
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Hi!
I was trying to get a consensus sequence using artic network bioinformatic protocol, i used the nex comand lines:
artic minion --medaka --medaka-model r941_min_high_g360 --normalise 200 --thre…
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The page title is "Coronavirus COVID-19 (2019-nCoV)". Since the virus was [renamed](https://www.sciencemag.org/news/2020/02/bit-chaotic-christening-new-coronavirus-and-its-disease-name-create-confusio…
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Hi,
Confirmed cases of Coronavirus are stuck to 11 in France. It wasn't the case the last time I looked in the files yesterday.
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# 2019-nCoV 正确应对姿势:0 — 蟒营™ 怂怼录
[https://blog.101.camp/DM/200205-DM18-IMHO-2019-nCoV-0/](https://blog.101.camp/DM/200205-DM18-IMHO-2019-nCoV-0/)
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# 新型冠状病毒(2019-nCoV)正确应对姿势:2 — 蟒营™ 怂怼录
[https://blog.101.camp/DM/200207-DM20-IMHO-2019-nCoV-2/](https://blog.101.camp/DM/200207-DM20-IMHO-2019-nCoV-2/)
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**Description :**
Long read sequences are failing in the demix step if the sequence id in the bed file is not matching with the reference.
**Sample name**: SRR21595278.fastq.gz
**Bed file**: http…