artic-network artic-ncov2019 issues

artic-network / artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

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issues

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Primer V5.3.2

#106 ReemaSingh opened 2 months ago
0
SARS-CoV-2

#105 rambaut opened 6 months ago
0
could not find primer scheme and reference sequence, attempting to download

#104 adelizamae opened 9 months ago
0
Add V5.3.2 primer scheme

#103 joshquick closed 1 year ago
0
nanopolish index -s failure / prime scheme download failure

#102 joannacolovas opened 1 year ago
0
Conda environment dependency issues with new versions of Medaka

#101 nenadmacesic opened 1 year ago
0
7 column primer.bed including seq field for ARTIC V1, V2 and V3

#100 bede opened 1 year ago
0
Help with vcf_merge

#99 chodarq closed 1 year ago
1
Error running nanopolish

#98 jidiaz opened 1 year ago
0
align_trim ValueError: min() arg is an empty sequence (artic 1.2.1)

#97 thierryjanssens closed 2 years ago
1
Error running artic minion

#96 jvelasquez24 opened 2 years ago
0
Update to V4/V4.1 under primer-schemes but not artic-ncov2019

#95 martinmchugh opened 2 years ago
0
Midnight primers scheme

#94 lupaupa1 opened 2 years ago
0
artic assembly - Command failed:muscle -in & -out

#93 AnyaKovalenko opened 2 years ago
2
Removed pseudorefs from v4.1 ref

#92 BioWilko closed 2 years ago
0
Installing ARTIC stuck at Solving environment

#91 Jonathan-D-Ip opened 2 years ago
1
Changing Minimum Sequencing Depth Parameter in artic-ncov2019

#90 laura-bankers opened 2 years ago
1
Nanopolish error

#89 CrimsonTyphoon1727 opened 2 years ago
3
multiple references in V4.1 refereces.fasta -> "FASTA has more than one sequence"

#88 bwlang opened 2 years ago
0
Medaka failed: Command failed:longshot -P 0 -F -A --no_haps

#87 gvaleman opened 2 years ago
1
V4.1 scheme and primer BED file

#86 kapsakcj opened 2 years ago
3
Artic enviroment does not install after 7 days

#85 gvaleman closed 2 years ago
2
Installation via conda (different ways) failed

#83 ravinkazo opened 2 years ago
1
artic_vcf_filter fails

#82 kclambi1 opened 2 years ago
0
PR to add a new primer scheme?

#81 bwlang opened 2 years ago
2
Error in Artic filter

#80 chodarq opened 2 years ago
0
Proper release?

#79 sassy-crick opened 2 years ago
0
adding custom primer scheme

#78 arz19893 opened 2 years ago
4
V4 analysis fail

#77 deearahman closed 2 years ago
0
Error with longshot when using too few reads/too small coverage

#76 Coppini closed 2 years ago
0
Update pooling volumes for v4

#75 joshquick closed 2 years ago
2
RAMPART help

#74 SC-Excal opened 3 years ago
0
Add V4 primer scheme

#73 joshquick closed 3 years ago
1
Error in artic minion --normalise 200 --threads 4 --scheme-directory ~/artic-ncov2019/primer_schemes --read-file run_name_barcode06.fastq --fast5-directory

#72 mibtisamnasar opened 3 years ago
1
Longer Conda Build Times

#71 tran-david opened 3 years ago
11
samtools command failed (align-trim)

#70 bernardowerner closed 3 years ago
1
Test Datasets

#69 kek12e opened 3 years ago
0
Using customized 'Primer' for ONT sequencing data

#68 chantisakee closed 3 years ago
2
scheme download failed

#67 ReemaSingh opened 3 years ago
2
Invalid BED file column 5

#66 nathanhaigh closed 3 years ago
2
Issue with coverage == 20 and low-freq variants in consensus sequence

#65 MaestSi opened 3 years ago
3
minion consensus fail: fasta sequence does not match REF allele at...

#64 nealplatt opened 3 years ago
1
Add gff

#63 dfornika closed 3 years ago
1
A fix for new artic's failure, medaka and h5py version not compatible

#62 Shaokang123 opened 3 years ago
3
How do I adapt pipeline to add additional primer pairs to the ARTIC scheme (V3)?

#61 hossal opened 3 years ago
1
Unable to via conda or source, stall at setup.

#60 macolato closed 3 years ago
0
nanopolish index still running after 24 hours

#59 RichardCorbett opened 3 years ago
7
artic_plot_amplicon_depth cmd missing

#58 emiracherif closed 3 years ago
5
Aric MinION pipeline - Nanopolish with fast5 in subfolder

#57 gwl2 opened 3 years ago
0
Creating conda environment hangs on "Solving environment: |"

#56 gwl2 closed 3 years ago
0