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artic-network
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artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
Creative Commons Attribution 4.0 International
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ambiguity sequences in assembly
#55
Shaokang123
closed
3 years ago
1
Update environment.yml
#54
will-rowe
closed
3 years ago
0
Medaka enabled pipeline exits with longshot failure
#53
szufan
closed
3 years ago
9
which version to use
#52
Shaokang123
closed
3 years ago
5
Create environment with Conda
#51
Peppie-Moony
closed
3 years ago
3
Mean read quality calculation in guppyplex.py
#50
OgnjenMilicevic
opened
3 years ago
1
how to change min reads depth for consensus assembly?
#49
Shaokang123
closed
3 years ago
6
Option to change minimum variant frequencies which pass filter
#48
tdalpert
opened
3 years ago
1
how to get my consensus sequence using artic-network MINion work flow using metagenomic data
#47
mhelbom14
opened
3 years ago
2
reference.fasta
#46
cmartinelle
opened
3 years ago
1
AssertionError: error: readgroup not found in provided primer scheme (1)
#45
fabgenomics
opened
3 years ago
3
replacing primer scheme submodule with a git subtree
#44
will-rowe
closed
3 years ago
1
primer list not found
#43
4938394094
closed
3 years ago
4
Error when running the MinION pipeline command.
#42
GeorgiM26
closed
3 years ago
2
replace primer scheme copies with submodule to ARTIC primer schemes
#41
will-rowe
closed
3 years ago
2
Scheme reference file not found:
#40
AroobAlhumaidy
opened
3 years ago
1
artic_plot_amplicon_depth crash in batch
#39
Mattstorey
closed
3 years ago
1
bcftools overlapping variants issue
#38
Psy-Fer
opened
4 years ago
8
Max of 400X
#37
charreca
closed
3 years ago
3
bumping artic pipeline to 1.1.2
#36
will-rowe
closed
4 years ago
0
replaced V3 nCoV-2019.bed, renamed original as nCoV-2019.bed.ORIGINAL
#35
lheisler
closed
4 years ago
1
nanopolish index - warning: detected invalid summary file entries
#34
tmishmi
opened
4 years ago
0
merging envs and installing artic pipeline via conda release
#33
will-rowe
closed
4 years ago
1
bump nanopolish to 0.13.2
#32
jts
closed
4 years ago
0
align_trim.py error using V3 scheme bed file
#31
lzhwin
closed
3 years ago
2
Medaka VS Nanopolish - workflows comparison
#30
MaestSi
closed
4 years ago
4
NameError: name 'barcode_directory' is not defined
#29
MaestSi
closed
4 years ago
4
Fix V3 primer bedfile format
#28
m-bull
closed
3 years ago
1
Primer names (alt suffix)
#27
leocaserta
opened
4 years ago
1
Adapters not removed from SP1 reads
#26
MaestSi
closed
4 years ago
8
guppyplex not found
#25
splaisan
closed
4 years ago
1
Update rampart
#24
jameshadfield
closed
3 years ago
2
No variant.tab output
#23
deearahman
closed
3 years ago
3
Nanopolish version doesn't exist on MacOS
#22
jameshadfield
closed
4 years ago
10
Add primers in fasta format, and add primer pairs file
#21
MrOlm
opened
4 years ago
0
--skip-nanopolish and --dry-run
#20
mi-koch
closed
4 years ago
4
Artic minion sometimes fails consensus generation step
#19
sthifx
closed
4 years ago
3
Fixed typo in longshot version
#18
jbeaulaurier
closed
4 years ago
1
porechop does not install with gcc 4.8.5 envs
#17
erinyoung
closed
4 years ago
2
RAMPART version 1.0
#16
Psy-Fer
closed
4 years ago
4
Oligo length in primer pool
#15
Vepached64
closed
4 years ago
0
Add V3 primers, fix BED for V1/2
#14
joshquick
closed
4 years ago
1
Add reference.gff for use by ivar
#13
tseemann
opened
4 years ago
0
primer BED file isn't in IVAR format
#12
tseemann
closed
3 years ago
7
Snakemake implementation of artic pipeline with wrapper script to give csv configuration compatibility.
#11
aineniamh
closed
4 years ago
0
barcodes removed during basecalling
#10
erinyoung
closed
4 years ago
1
Missing license in git repository
#9
k-florek
closed
4 years ago
0
added cc-by-4.0 license
#8
k-florek
closed
4 years ago
0
Replace nCoV-2019_18_LEFT with nCoV-2019_18_LEFT_alt2
#7
joshquick
closed
4 years ago
0
Rampart & Barcoding in MinKNOW
#6
mattdmem
closed
4 years ago
1
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