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artic-network
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artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
Creative Commons Attribution 4.0 International
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Primer V5.3.2
#106
ReemaSingh
opened
4 months ago
0
SARS-CoV-2
#105
rambaut
opened
8 months ago
0
could not find primer scheme and reference sequence, attempting to download
#104
adelizamae
opened
11 months ago
0
Add V5.3.2 primer scheme
#103
joshquick
closed
1 year ago
0
nanopolish index -s failure / prime scheme download failure
#102
joannacolovas
opened
1 year ago
0
Conda environment dependency issues with new versions of Medaka
#101
nenadmacesic
opened
1 year ago
0
7 column primer.bed including seq field for ARTIC V1, V2 and V3
#100
bede
opened
1 year ago
0
Help with vcf_merge
#99
chodarq
closed
1 year ago
1
Error running nanopolish
#98
jidiaz
opened
2 years ago
0
align_trim ValueError: min() arg is an empty sequence (artic 1.2.1)
#97
thierryjanssens
closed
2 years ago
1
Error running artic minion
#96
jvelasquez24
opened
2 years ago
0
Update to V4/V4.1 under primer-schemes but not artic-ncov2019
#95
martinmchugh
opened
2 years ago
0
Midnight primers scheme
#94
lupaupa1
opened
2 years ago
0
artic assembly - Command failed:muscle -in & -out
#93
AnyaKovalenko
opened
2 years ago
2
Removed pseudorefs from v4.1 ref
#92
BioWilko
closed
2 years ago
0
Installing ARTIC stuck at Solving environment
#91
Jonathan-D-Ip
opened
2 years ago
1
Changing Minimum Sequencing Depth Parameter in artic-ncov2019
#90
laura-bankers
opened
2 years ago
1
Nanopolish error
#89
CrimsonTyphoon1727
opened
2 years ago
3
multiple references in V4.1 refereces.fasta -> "FASTA has more than one sequence"
#88
bwlang
opened
2 years ago
0
Medaka failed: Command failed:longshot -P 0 -F -A --no_haps
#87
gvaleman
opened
2 years ago
1
V4.1 scheme and primer BED file
#86
kapsakcj
opened
2 years ago
3
Artic enviroment does not install after 7 days
#85
gvaleman
closed
2 years ago
2
Installation via conda (different ways) failed
#83
ravinkazo
opened
2 years ago
1
artic_vcf_filter fails
#82
kclambi1
opened
2 years ago
0
PR to add a new primer scheme?
#81
bwlang
opened
2 years ago
2
Error in Artic filter
#80
chodarq
opened
2 years ago
0
Proper release?
#79
sassy-crick
opened
2 years ago
0
adding custom primer scheme
#78
arz19893
opened
2 years ago
4
V4 analysis fail
#77
deearahman
closed
2 years ago
0
Error with longshot when using too few reads/too small coverage
#76
Coppini
closed
3 years ago
0
Update pooling volumes for v4
#75
joshquick
closed
2 years ago
2
RAMPART help
#74
SC-Excal
opened
3 years ago
0
Add V4 primer scheme
#73
joshquick
closed
3 years ago
1
Error in artic minion --normalise 200 --threads 4 --scheme-directory ~/artic-ncov2019/primer_schemes --read-file run_name_barcode06.fastq --fast5-directory
#72
mibtisamnasar
opened
3 years ago
1
Longer Conda Build Times
#71
tran-david
opened
3 years ago
11
samtools command failed (align-trim)
#70
bernardowerner
closed
3 years ago
1
Test Datasets
#69
kek12e
opened
3 years ago
0
Using customized 'Primer' for ONT sequencing data
#68
chantisakee
closed
3 years ago
2
scheme download failed
#67
ReemaSingh
opened
3 years ago
2
Invalid BED file column 5
#66
nathanhaigh
closed
3 years ago
2
Issue with coverage == 20 and low-freq variants in consensus sequence
#65
MaestSi
opened
3 years ago
3
minion consensus fail: fasta sequence does not match REF allele at...
#64
nealplatt
opened
3 years ago
1
Add gff
#63
dfornika
closed
3 years ago
1
A fix for new artic's failure, medaka and h5py version not compatible
#62
Shaokang123
opened
3 years ago
3
How do I adapt pipeline to add additional primer pairs to the ARTIC scheme (V3)?
#61
hossal
opened
3 years ago
1
Unable to via conda or source, stall at setup.
#60
macolato
closed
3 years ago
0
nanopolish index still running after 24 hours
#59
RichardCorbett
opened
3 years ago
7
artic_plot_amplicon_depth cmd missing
#58
emiracherif
closed
3 years ago
5
Aric MinION pipeline - Nanopolish with fast5 in subfolder
#57
gwl2
opened
3 years ago
0
Creating conda environment hangs on "Solving environment: |"
#56
gwl2
closed
3 years ago
0
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