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> Convolutional neural networks (CNNs) have been shown to perform exceptionally well in a variety of tasks, including biological sequence classification. Available implementations, however, are usuall…
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Hi,
I encountered a problem when running **EpiTraceAge_Convergence** in the step 4 of the [tutorial](https://epitrace.readthedocs.io/en/latest/MSscATAC.html#step-4-epitrace-analysis). It seems to b…
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I have a question. I don't understand why (in Visual Genome) SGDet gains such a small improvement compared to Neural Motifs whereas SGCls has gains such a larger improvement? Isn't the only difference…
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Hi and thanks for developing this very useful tool!
when i tried to use snapatac2.tl.add_cor_scores(network, peak_mat= data) it gives me error of "'NoneType' object has no attribute 'obs_names'"
da…
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Paper: https://www.nature.com/articles/s41592-023-01938-4
Abstract:
Joint profiling of chromatin accessibility and gene expression in individual cells provides an opportunity to decipher enhancer-d…
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Currently it is very easy to filter the graph in any way a user may want i.e. get nodes which have a degree>10. However if we then ask for the neighbours of these nodes this filter will obviously be i…
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Hello @zicanl
I was wondering if there is a way to not just count the total mappings of my motif in the inputGraph, but also to save the edges ( the subgraphs ) of my inputGraph that are indeed the …
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**What is the feature or improvement you would like to see?**
Expose `igraph_motifs_randesu_callback()` in R, so that I can draw a random sample of fully connected triads (A-B-C-A) and partially conn…
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One of the goals of the project, after we get an model working enough, is to be able to feed into the model "random sequences" for the model to be able to predict function. This serves two purposes: 1…
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Hi,
While using powergrasp in metage2metabo, I encountered the following error:
```
Traceback (most recent call last):
File "/usr/local/bin/m2m_analysis", line 33, in
sys.exit(load_ent…