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### Hello @luispedro @unode
#### What's the recommendation when dealing with soil metagenomes since there is no particular predefined profiler for it or any other metagenome that has no predefined p…
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Hi all.
I am trying to test ngless with the examples for ocean's samples using this instruction:
`ngless --threads=40 --index-path 'index' -t 'temp' ocean-demo.ngl . out`
but I have the following …
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Dear luis,
Since also metaphlan 3 is out, maybe you can add this as well?
https://huttenhower.sph.harvard.edu/metaphlan/
Cheers,
Ulrike
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I noticed the [documentation](https://ngless.embl.de/motus.html) and [template script](https://github.com/ngless-toolkit/ngless/blob/master/examples/motus.ngl) for motus profiling seems to use motus v…
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## Observed Behavior
I'm running a crux cascade-search and the search fails, producing a core dump if num-threads=8 at the "Starting search." step (shortly after generating the spectrumrecords.tmp …
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This was tested using the 1.0.0 conda build (is this one just the wrapped static build?) as well as with several different 'static' and containerized versions from 0.9 to 1.0.1.
In all cases loadin…
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Hi,
I found a phylogenetic tree on https://motu-tool.org/download.html for version 2.5.
Can you also provide one for version 2.6?
Would be greatly appreciated!
Best,
Hannah
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Scenario:
1) 12 samples are being processed using the `parallel` machinery `lock1()` and `collect()`.
2) 10 samples complete and 2 fail.
3) The 2 failing samples are considered bad and are exclud…
unode updated
5 years ago
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This can be seen when running for instance [the parallel test](https://github.com/ngless-toolkit/ngless/tree/master/tests/parallel) with `ngless --create-report -o report parallel.ngl`.
The reason …
unode updated
4 years ago
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Hi @luispedro. I was just looking into #273, which is about the `--interleaved` option. It currently allows mixing single ends with paired ends. One issue with the current implementation is that the r…