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As a bioinformatics analyst I want to generate a BED file from a gene panel for genomic test analysis so that I can use it as an input to an NGS pipeline tool.
- [ ] Get gene panel from panelapp, ref…
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**Is your feature request related to a problem? Please describe.**
The Network Security Group Flow Logs analysis tool is not very advanced and comfortable. I think it would be very useful to have a f…
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Dear Donald Lee,
We have a research subject of antibody NGS sequence,and I have found your code of BRILIA.It's difficult for me to use BRILIA because I don't have the background of matlab. Could you…
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**Is your feature request related to a problem? Please describe.**
Many clinical relevant regions are difficult to sequence via NGS due to low complexity and homology (see #529). Usually, these diagn…
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I want to upload my own column to cbioportal docker image. So, referring to the link[https://docs.cbioportal.org/5.1-data-loading/data-loading/file-formats#mutation-data], I wrote the input files acco…
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Attached is some background reading on Principal Components Analysis (PCA) and RNA-Sequencing.
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Hello again!
I want to process the sequencing data obtained by Croce _et al_ in **"Phage display profiling of CDR3β loops enables machine learning predictions of NY-ESO-1 specific TCRs"** with TRUS…
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I think we need to revisit our trimming parameters for ThruPlex NGS16S libraries (more an issue for the clampi pipeline than this one). If it's straightforward to do, it might be helpful to preserve t…
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Hello!
I wanted to express my gratitude for developing such excellent software! I recently assembled diploid haplotypes using pacbio hifi data, ont ultra long data, and hic data. I ran separate mer…
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Hi all,
I'm finding plotting genes of interest using the following code seems to be just randomly assigning values. It also isn't plotting the violin shape.
show expression for a single target…