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Hi,
I would like to use casper to find CN from bulk RNA-seq data of mouse and chicken.
I have followed successfully the instruction until the function "generateAnnotation".
However since thi…
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Plotting the models of the current `exo-rem.tgz` grid (from 2024-03-11), there are some suspicious non-monotonicities and some of my fits are getting stuck at the edge. For example (colour = flux):
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Hi,
I am trying to perform GO enrichment analysis for non-model plants. Please let me know if I can use GO_MWU with non-model species for GO enrichment analysis.
I tried to download a gaf file (a…
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Hi,
I am trying to perform GO enrichment analysis for non-model species. For that I used BiNGO at Cytoscape. I tried to download a gaf file (annotation file) as reference from the GO database and and…
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Hi,
I have been looking for ways to improve _de novo_ transcriptome assemblies from non-model species by using reference information from amino acid alignments (i.e. HMM profiles) of orthologous ge…
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Can we have a metric on the website about the number of genes in GO-CAM models (by species)
i.e. a non-redundant list of genes that are causally connected (obviously, some genes will be in mul…
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Dear @jeffreyhanson
I'm currently utilizing the PriotizR package to identify new priority areas for orchids in Italy. For the planning units (PUs), I'm using the Italian grid and incorporating vario…
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Dear Adam, Gil, and other developers,
Thank you very much for developing and maintaining LDhat. I was hoping you could help me with a couple of questions, and I hope this is the right place for tha…
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Hi Federico,
Thank you for this really nice and helpful package. It is really useful.
I used it for agronomical species (pig and bovine).
I encountered a problem when trying to use enhance_table…
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Hello,
I'm very new to machine learning and wanting to run Baskerville (as suggested by @davek44 on the Basenji page).
I was wondering if you had any beginner-friendly guidance for how to imple…