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This is more of a interoperability question.
Would it be worth for me to write a output for OWL files for my knowledge graph of GlobalChem in IUPAC which has some reference to biological systems an…
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It would be nice if I could use propertyChainAxioms in certain ontologies (e.g. RO) to connect certain terms. Example use case is deriving "causally upstream of or within, positive effect" (RO:0004047…
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```
def parse_from(self, handle, threads=None):
# Load the OBO graph into a syntax tree using fastobo
> doc = fastobo.load_graph(handle).compact_ids()
E File "", line 1
…
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Some feedback on our recent survey of OBO tools (shortened to essence)
- I still struggle to find the tools and documentation about the tools
- ODK documentation needs improving. It's probably all…
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When trying to import the unified phenotype ontology (UPHENO), I run into some errors about `Too many cyclic paths (> 1000).` Is there something different about this ontology? If so, is there a way i…
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I think it would be valuable to have this match the versioning of ChEBI (which is using sequential version numbers) instead of introducing an arbitrary date versioning system
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I would expect the following to return all parts of "paired fin", but that either that expectations is wrong, or the results are far from complete.
```sh
curl -X GET "https://kb.phenoscape.org/api/t…
hlapp updated
3 years ago
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Consistent with other RDF serializations we should add a prefixes header
```yaml
prefixes:
slot_uri: sh:declare
range: PrefixDeclaration
multivalued: true
inlined: true
…
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A common operation now part of standard OBO workflows via robot is the relaxation of equivalence axioms to weaker subClassOf axioms.
For the majority of ontologies this falls into one of two templa…
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It can be extremely useful to know in advance which category a class belongs to. For example, GO has 3 branches: biological_process, molecular_function, and cellular_component. This was implemented us…