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per our last R01 submission,
>We will implement amino acid and Dayhoff-6 queries with spacegraphcats by building secondary indices on top of the cDBG unitigs, which will allow us to anchor protein …
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>hundreds or thousands of “extra” genes per genome,
but black box is black box
1)
for example
PGAP report 434 genes on plasmid
https://www.ncbi.nlm.nih.gov/protein?LinkName=nuccore_protein&fr…
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Hi!
I am using Hmmer3 with bivalve genomes looking for 70-80 aa genes. BUSCO scores for the genomes are in the upper 90s (96-98% complete for BUSCO Metazoa) and most assemblies are chromosome-scale…
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- please download and use the sequence (alpha-1-microglobulin/bikunin precursor (AMBP), mRNA):
[AMBP_protein.txt](https://github.com/kacst-bioinfo-lab/labwork/files/1203532/AMBP_protein.txt)
- Firs…
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Hi Brian,
There seems to be a bug in how EVM calculates phase for the gff3 output. Here's the problem - one of our users has submitted genome annotations predicted by EVM to us, including both a gf…
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After https://github.com/camilogarciabotero/GeneFinder.jl/pull/26 and https://github.com/camilogarciabotero/GeneFinder.jl/pull/32 we can now have a more flexible way to use the `findorfs` with multipl…
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I am trying to find the best way to identify overlapping genes in my complete viruses extracted from metagenomes. I tried genotate hoping that it would identify them contrary to prodigal-gv and phanot…
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I'm attempting to load the embedding data of a Youtube video but that results in a network exception, without an error message
> `[Unknown Error] Uncaught Embed\Http\NetworkException:`
```php
(ne…
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Hi,
I am using SemiBin on a GPU cluster where I have a limited time quota.
Would it be possible to add a parameter so I can calculate contig coverages on CPU nodes only, and use my credits more ef…
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https://mp.weixin.qq.com/s/K12dpQRcvbQz2xgCfLP94w
ixxmu updated
8 months ago